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Databases, Internet Resources and Bioinformatics for Crop Improvement Workshop

Front (L-R): Mrs. Corné Lombard (Course Administrator, ACGT), Akinola Popoola (Nigeria), Prof. Dave Berger (Course Leader, UP), Jendeka Mahasi (Kenya), Josephine Songa (Kenya), Anthony Pariyo (Uganda), Sumita Ramgareeb (SASRI, South Africa), Damian Njoku (Nigeria), Dibanzilua Nginamau (Angola)

Middle (L-R) : Jude Obidiegwu (Nigeria), Renee Prins (UFS and CenGen, South Africa), Koffi Kouassi (Cote d&#39Ivoire), Charles Mutengwa (Zimbabwe), Eric Magembe (Kenya), Elfadil Adam (Sudan), Roobavathie Naidoo (ACCI, South Africa), Maxwell Asante (Ghana), Trushar Shah (Bioinformatics Co-ordinator, BECA, Nairobi), Dr. Fourie Joubert (ACGT Bioinformatics Unit)

Top row (L-R): Dr. Zander Myburg (Guest Lecturer, Genetics Dept., FABI, UP), Prof. Jan-Peter Nap (Course Presenter, Wageninen University, Netherlands), Dr. Yoseph Beyene (Course Presenter, Botany Dept, FABI, UP), Shawn Berry (SASRI, South Africa), Solomon Woyessa (Ethiopia), John Derera (ACCI and Zimbabwe), Kwame Peasah (Ghana), Arnold Mushongi (Tanzania)

New Publications

Twiddy D, Fouché A, Akinsanmi OA, Fourie G. (2024) Biology and pathogenicity of fungi causing husk rot of macadamia in South Africa. European Journal of Plant Pathology :1-18. 10.1007/s10658-024-02915-z
Visagie CM, Yilmaz N, Allison JD, Barreto RW, Boekhout T, Boers J, Delgado MA, Dewing C, Fitza KNE, Furtado ECA, Gaya E, Hill R, Hobden A, Hu DM, Hülsewig T, Khonsanit A, Luangsa-Ard JJ, Mthembu A, Pereira CM, Price J-L, Pringle A, Qikani N, Sandoval-Denis M, Shumacher RK, Seifert KA, Slippers B, Tennakoon DS, Thanakitpipattana D, vanVuuren N, Groenewald JZ, Crous PW. (2024) New and Interesting Fungi. 7.. Fungal Systematics and Evolution 13:441–494. 10.3114/fuse.2024.13.12 PDF
Coutinho TA, Carstensen G, Venter SN, Chen SF, Tarigan M, Wingfield MJ. (2024) Bacterial community in apparently healthy and asymptomatic Eucalyptus trees and those with symptoms of bacterial wilt. Journal of Plant Pathology 10.1007/s42161-024-01697-x
van Vuuren N, Yilmaz N, Wingfield MJ, Visagie CM. (2024) Five novel Curvularia species (Pleosporaceae, Pleosporales) isolated from fairy circles in the Namib desert. Mycological Progress 23:39. 10.1007/s11557-024-01977-x
Visagie CM, Cruywagen EM, Duong TA. (2024) A new Paecilomyces from wooden utility poles in South Africa. Fungal Systematics and Evolution 13:163–181. 10.3114/fuse.2024.13.10
Aylward J, Wilson AM, Visagie CM, Spraker J, Barnes I, Buitendag C, Ceriani C, Del Mar Angel L, du Plessis D, Fuchs T, Gasser K, Krämer D, Li W, Munsamy K, Piso A, Price J-L, Sonnekus B, Thomas C, van der Nest A, van Dijk A, van Heerden A, van Vuuren N, Yilmaz N, Duong TA, van der Merwe NA, Wingfield MJ, Wingfield BD. (2024) IMA Genome – F19: A genome assembly and annotation guide to empower mycologists, including annotated draft genome sequences of Ceratocystis pirilliformis, Diaporthe australafricana, Fusarium ophioides, Paecilomyces lecythidis, and Sporothrix stenoceras. IMA Fungus 15(1):12. 10.1186/s43008-024-00142-z
Ceriani C, Wingfield MJ, Fru F, van Wyk S, Rodas C, Wingfield BD, Steenkamp ET. (2024) Clonality and limited population diversity of Fusarium circinatum in Colombia. Forest Pathology 54(3):e12864. 10.1111/efp.12864
Jami F, Duma S, Fourie G, Schoeman M. (2024) First report of Botrytis cinerea causing flower blight on macadamia in South Africa. Journal of Phytopathology 72:e13325.:1-4. 10.1111/jph.13325
Paap T, Balocchi F, Burgess TI, Bose T, Wingfield MJ. (2024) A diverse range of Phytophthora species from botanical gardens in South Africa, including the novel Clade 5 species, Phytophthora mammiformis sp. nov.. Fungal Systematics and Evolution 13:111-122. 10.3114/fuse.2024.13.05
Ramaswe JB, Steenkamp ET, De Vos L, Fru FF, Adegeye OO, Wingfield BD. (2024) Sex pheromone receptor Ste2 orchestrates chemotropic growth towards pine root extracts in the pitch canker pathogen Fusarium circinatum. Pathogens 13:425. 10.3390/pathogens13050425
Midgley KA, van den Berg N, Swart V. (2024) Identification of Phytophthora cinnamomi CRN effectors and their roles in manipulating cell death during Persea americana infection. BMC Genomics 25:435. 10.1186/s12864-024-10358-3
Marais I, Buitendag C, Duong TA, Crampton BG, Theron J, Kidanemarium D, Berger DK. (2024) Double-stranded RNA uptake for the control of the maize pathogen Cercospora zeina. Plant Pathology 73(6):1480-1490. 10.1111/ppa.13909
van Heerden A, Pham NQ, Wingfield BD, Wingfield MJ, Muro Abad JI, Durán A, Wilken PM. (2024) LAMP assay to detect Elsinoë necatrix; an important Eucalyptus shoot and leaf pathogen. Plant Disease 10.1094/PDIS-01-24-0086-RE
Silva GA, Oliveira MES, Rêgo GMS, Wingfield BD, Wingfield MJ, Ferreira MA. (2024) Chrysoporthe brasiliensis sp. nov. pathogenic to Melastomataceae in southeast Brazil. Fungal Biology 10.1016/j.funbio.2024.04.001
Fick A, Swart V, Bombarely A, van den Berg N. (2024) Comparative transcriptional analysis of Persea americana MYB, WRKY and AP2/ERF transcription factors following Phytophthora cinnamomi infection. Molecular Plant Pathology 25(4):e13453. 10.1111/mpp.13453 PDF
Van Lill M, Venter SN, Muema EK, Palmer M., Beukes CW, Chan WY, Steenkamp ET. (2024) SeqCode facilitates naming of South African rhizobia left in limbo. Systematics and Applied Microbiology 47(2-3):126504. 10.1016/j.syapm.2024.126504 PDF
Visagie CM, Meyer H, Yilmaz N. (2024) Maize–Fusarium associations and their mycotoxins: Insights from South Africa. Fungal Biology 10.1016/j.funbio.2024.03.009
Elisa P, Allison J, Hurley BP, Slippers B, Fourie G. (2024) Lethal and sublethal effects of insecticides on Bathycoelia distincta (Heteroptera: Pentatomidae). African Entomology 32: e16992:1-9. 10.17159/2254-8854/2024/a16992
Pietersen G, Morgan S, Read DA. (2024) First report of Citrus concave gum-associated virus (CCGaV) on apple (Malus spp.) in South Africa. Journal of Plant Pathology 10.1007/s42161-024-01629-9
Gush S, Lebre P, Coutinho TA, Cowan DA, van der Waals JE. (2024) Disentangling shifts in the soil microbiome of potatoes infected with Rhizoctonia solani Anastomosis Group 3-PT in search of potential biocontrol agents. Phytobiomes Journal 10.1094/PBIOMES-06-23-0046-R