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The first 'in-house' fungal genome has been sequenced in the halls of FABI using Oxford NanoPore sequencing technology.  This is a step towards fungal biologists being able to sequence the genomes of the fungi they work on for approximately US$1000 while in the comfort of their own laboratory. Drs Tuan Doung, Alistair McTaggart and Prof. Brenda Wingfield have tested a MinION to sequence the genome of an important pathogen of sweet potato - with some promising results. The genomes of several plant-pathogenic fungi in South Africa will now be sequenced in collaboration with other FABIans and members of the DST-NRF Centre of Excellence in Tree Health Biotechnology (CTHB).

Photo Caption:  Dr Tuan Doung loads the first sample of genomic DNA run on the MinION at FABI.

New Publications

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Phasha MM, Wingfield BD, Coetzee MPA, Santana QC, Fourie G, Steenkamp ET. (2017) Architecture and distribution of introns in core genes of four Fusarium species. G3: Genes|Genomes|Genetics 7(11):3809-3820. 10.1534/g3.117.300344
Chen SF, Liu QL, Li GQ, Wingfield MJ. (2017) Quambalaria species associated with eucalypt diseases in southern China. Frontiers of Agricultural Science and Engineering 10.15302/J-FASE-2017173 PDF
Meyer J, Berger DK, Christensen SA, Murray SL. (2017) RNA-Seq analysis of resistant and susceptible sub-tropical maize lines reveals a role for kauralexins in resistance to grey leaf spot disease, caused by Cercospora zeina. BMC Plant Biology 17:197. 10.1186/s12870-017-1137-9
Nel WJ, Duong TA, Wingfield BD, Wingfield MJ, De Beer ZW. (2017) A new genus and species for the globally important, multi-host root pathogen Thielaviopsis basicola. Plant Pathology 10.1111/ppa.12803
Aylward J, Wingfield BD, Dreyer LL, Roets F, Wingfield MJ, Steenkamp ET. (2017) Contrasting carbon metabolism in saprotrophic and pathogenic Microascalean fungi from Protea trees. Fungal Ecology 30:88-100. 10.1016/j.funeco.2017.09.002
Wingfield BD. (2017) South Africa can’t afford to see its universities pitch over the precipice. The Conversation https://theconversation.com/south-africa-cant-afford-to-see-its-universities-pitch-over-the-precipic PDF
Li GQ, Liu FF, Li JQ, Liu QL, Chen SF. (2017) Botryosphaeriaceae from Eucalyptus plantations and adjacent plants in China. Persoonia 10.3767/persoonia.2018.40.03 PDF
Tchotet Tchoumi JM, Coetzee MPA, Vivas M, Rajchenberg M, Roux J. (2017) Wood-rotting basidiomycetes associated with declining native trees in timber-harvesting compartments of the Garden Route National Park of South Africa. Austral Ecology 10.1111/aec.12524
Theron-De Bruin N, Dreyer LL, Ueckermann EA, Wingfield MJ, Roets F. (2017) Birds mediate a fungus-mite mutualism. Microbial Ecology 10.1007/s00248-017-1093-9
Wingfield BD, Vaughan K. (2017) Money woes force South Africa to revisit how it rewards researchers. The Conversation https://theconversation.com/money-woes-force-south-africa-to-revisit-how-it-rewards-researchers-8615 PDF
De Beer ZW, Marincowitz S, Duong TA, Wingfield MJ. (2017) Bretziella, a new genus to accommodate the oak wilt fungus, Ceratocystis fagacearum (Microascales, Ascomycota). MycoKeys 27 10.3897/mycokeys.27.20657 PDF
Li JQ, Wingfield MJ, Liu QL, Barnes I, Roux J, Lombard L, Crous PW, Chen SF. (2017) Calonectria species isolated from Eucalyptus plantations and nurseries in South China. IMA Fungus 8(2):259-286. 10.5598/imafungus.2017.08.02.04
Paap T, Burgess TI, Wingfield MJ. (2017) Urban trees: bridge-heads for forest pest invasions and sentinels for early detection. Biological Invasions 10.1007/s10530-017-1595-x
Pham HTL, Nguyen LTT, Duong TA, Bui DTT, Doan QT, Nguyen HTT, Mundt S. (2017) Diversity and bioactivities of nostocacean cyanobacteria isolated from paddy soil in Vietnam. Systematic and Applied Microbiology 10.1016/j.syapm.2017.08.001
Wingfield BD. (2017) The privileges and opportunities of a research sabbatical. South African Journal of Science 113(9/10):#a0234. 10.17159/sajs.2017/a0234
Bose T, Burgess TI, Roux J, Wingfield MJ. (2017) Phytophthora alticola; revised description based on new collections and a neotype. Sydowia 69:161-170. 10.12905/0380.sydowia69-2017-0161
Human ZR, Crous CJ, Roets F, Venter SN, Wingfield MJ, de Beer ZW. (2017) Biodiversity and ecology of flower-associated actinomycetes in different flowering stages of Protea repens. Antonie van Leeuwenhoek 10.1007/s10482-017-0942-3
Wingfield BD. (2017) The peer review system has flaws. But it’s still a barrier to bad science. The Conversation http://bit.ly/2holsgS
McTaggart AR, Beasley DR, Wingfield MJ, Wood AR, Pretorius ZA, Drenth A, Shivas RG, Roux J. (2017) A dynamic, web-based resource to identify rust fungi (Pucciniales) in southern Africa. MycoKeys 26:77-83. 10.3897/mycokeys.26.14602
De Maayer P, Aliyu H, Vikram S, Blom J, Duffy B, Cowan DA, Smits THM, Venter SN, Coutinho TA. (2017) Phylogenomic, pan-genomic, pathogenomic and evolutionary genomic insights into the agronomically relevant enterobacteria Pantoea ananatis and Pantoea stewartii. Frontiers in Microbiology 8(1755) 10.3389/fmicb.2017.01755