Bian C, Takashi H, Houbraken J,
Visagie CM, Ban S, Yaguchi T, D'hooge E, Sklenár F, Kusuya Y, Hubka V. (2022)
Reducing the number of accepted species in Aspergillus series Nigri.
Studies in Mycology 102:95–132.
10.3114/sim.2022.102.03
David Read, Ronel Roberts, Goddy Prinsloo, Genevieve Thompson. (2022)
Genomic and phylogenetic characterization of wheat yellows virus, a novel tenuivirus infecting wheat in South Africa.
Archives of Virology
10.1007/s00705-022-05649-7
Wingfield BD,
Berger DK,
Coetzee MPA,
Duong TA, Martin A,
Pham NQ,
Van den Berg N,
Wilken PM, Arun-Chinnappa KS,
Barnes I,
Buthelezi S, Dahanayaka BA, Durán A,
Engelbrecht J, Feurtey A,
Fourie A,
Fourie G,
Hartley J, Kabwe ENK,
Maphosa M,
Narh Mensah DL,
Nsibo DL, Potgieter L, Poudel B, Stukenbrock EH,
Thomas C, Vaghefi N,
Welgemoed T,
Wingfield MJ. (2022)
IMA genome‑F17.
13:19.
10.1186/s43008-022-00104-3
Sklenář F, Glässnerová K, Jurjević Z, Houbraken J, Samson RA,
Visagie CM,
Yilmaz N, Gene J, Cano J, Chen AJ, Nováková A, Yaguchi T, Kolařík M, Hubka V. (2022)
Taxonomy of Aspergillus series Versicolores: species reduction and lessons learned about intraspecific variability.
Studies in Mycology 102:53–93.
10.3114/sim.2022.102.02
Glässnerová K, Kolařík M, Kubátová A, Siqueira JPZ, Gené J,
Visagie CM, Yaguchi T, Houbraken J, Sklenář F, Hubka V. (2022)
A monograph of Aspergillus section Candidi.
Studies in Mycology 102:1–51.
10.3114/sim.2022.102.01
Guillino ML, Pugliese M, Pan X, Makkouk K, Loplan R, Juroszek P,
Hurley BP, Garrett K, Chakraborty S, Angelotti F, Al-Jboory I, Albajes R, Stephenson T. (2022)
Climate change and pathways used by pests as challenges to plant health in agriculture and forestry.
Sustainability 14:12421.
10.3390/su141912421 
Mavima L,
Beukes CW, Palmer M, De Meyer SE, James EK, Maluk M, Muasya MA,
Avontuur JR, Chan WY,
Venter SN,
Steenkamp ET. (2022)
Delineation of Paraburkholderia tuberum sensu stricto and description of Paraburkholderia podalyriae sp. nov. nodulating the South African legume Podalyria calyptrata.
Systematic and Applied Microbiology 45(3)
10.1016/j.syapm.2022.126316
Wingfield BD,
De Vos L,
Wilson AM,
Duong AT, Vaghefi N, Botes A, Kharwar RN, Chand R, Poudel B, Aliyu H, Barbetti MJ,
Chen S, de Maayer P,
Liu F, Navathe S, Sinha S,
Steenkamp ET,
Suzuki H, Tshisekedi KA,
van der Nest MA,
Wingfield MJ. (2022)
Draft genome assemblies of Fusarium marasasianum, Huntiella abstrusa, two Immersiporthe knoxdaviesiana isolates, Macrophomina pseudophaseolina, Macrophomina phaseolina, Naganishia randhawae, and Pseudocercospora cruenta.
IMA Fungus 13(1):3.
10.1186/s43008-022-00089-z
Avontuur JR,
Palmer M,
Beukes CW,
Wai YC,
Tasiya T,
van Zyl E,
Coetzee MPA, Stepkowski T,
Venter SN,
Steenkamp ET. (2022)
Bradyrhizobium altum sp. nov., Bradyrhizobium oropedii sp. nov. and Bradyrhizobium acaciae sp. nov. from South Africa show locally restricted and pantropical nodA phylogeographic patterns.
Molecular Phylogenetics and Evolution 167
10.1016/j.ympev.2021.107338
Crous PW, Osieck ER;J, Shivas RG;Z, Bañares A;B,
Burgess TI, Cabero J;C, Ferreira RJ;F, Ivanova DD;I, Lebeuf R;L,
McTaggart AR, Mehrabi-Koushki M;M,
Nel WJ, Nguyen TH;N, Reul M;R, Sato T;S, Tonegawa C;T,
Visagie CM, C.M.; Vizzini A;V. (2022)
Fungal Planet description sheets: 1284-1382.
Persoonia - Molecular Phylogeny and Evolution of Fungi 47(6):1284-1382.
10.3767/persoonia.2021.47.06
Guignard Q, Allison JD,
Slippers B. (2022)
The evolution of insect visual opsin genes with specific consideration of the influence of ocelli and life history traits.
22:2.
10.1186/s12862-022-01960-8
Houbraken J,
Visagie CM, Frisvad J. (2021)
Recommendations To Prevent Taxonomic Misidentification of Genome-Sequenced Fungal Strains.
Microbiology Resource Announcements 10:e0107420.
10.1128/MRA.01074-20
Pyrri I,
Visagie CM, Soccio P, Houbraken J. (2021)
Re-Evaluation of the Taxonomy of Talaromyces minioluteus.
Journal of Fungi 7:993.
10.3390/jof7110993
Read DA, Thompson GD, Swanevelder D,
Pietersen G. (2021)
Detection and diversity of grapevine virus L from a Vitis cultivar collection in Stellenbosch, South Africa.
European Journal of Plant Pathology
10.1007/s10658-021-02380-y
Visagie CM, Goodwell M, Nkwe DO. (2021)
Aspergillus diversity from the Gcwihaba Cave in Botswana and description of one new species.
Fungal Systematics and Evolution 8:81-89.
10.3114/fuse.2021.08.07
Creux NM, Brown EA, Garner AG, Saeed S, Scher CL, Holalu SV, Yang D, Maloof JN, Blackman BK, Harmer SL. (2021)
Flower orientation influences floral temperature, pollinator visits and plant fitness.
New Phytologist
10.1111/nph.17627
Read DA,
Roberts R, Thompson GD. (2021)
Genomic characterization of two novel viruses infecting Barleria cristata L. from the genera Orthotospovirus and Polerovirus.
Archives of Virology
10.1007/s00705-021-05150-7
Visagie CM, Frisvad JC, Houbraken J, Visagie A, Samson RA, Jacobs K. (2021)
A re-evaluation of Penicillium section Canescentia, including the description of five new species.
Persoonia 46:163-187.
10.3767/persoonia.2021.46.06
Crous PW, Hernández-Restrepo M, Schumacher RK, Cowan DA, Maggs-Kölling G, Marais E,
Wingfield MJ,
Yilmaz N, Adan OCG, Akulov A, Álvarez Duarte E, Berraf-Tebbal A, Bulgakov TS, Carnegie AJ,
de Beer ZW, Decock C, Dijksterhuis C,
Duong TA, Eichmeier A, Hien LT, Houbraken JAMP, Khanh TN, Liem NV, Lombard L, Lutzoni FM, Miadlikowska JM,
Nel WJ, Pascoe IG, Roets F,
Roux J, Samson RA, Shen M, Spetik M, Thangavel R, Thanh HM, Thao LD, van Nieuwenhuijzen EJ, Zhang JQ, Zhang Y, Zhao LL, Groenewald JZ. (2021)
New and Interesting Fungi. 4.
Fungal Systematics and Evolution 7:255-343.
10.3114/fuse.2021.07.13
van der Nest MA, Chávez R,
De Vos L,
Duong TA, Gil-Durán C, Ferreira MA,
Lane FA, Levicán G,
Santana QC,
Steenkamp ET,
Suzuki H, Tello M, Rakoma JR, Vaca I, Valdés N,
Wilken PM,
Wingfield MJ,
Wingfield BD. (2021)
Draft genome sequences of Penicillium roqueforti, Fusarium sororula, Chrysoporthe puriensis, and Chalaropsis populi.
IMA Fungus 12:5.
10.1186/s43008-021-00055-1
Nsibo DL,
Barnes I, Omondi DO, Dida MM,
Berger DK. (2021)
Population genetic structure and migration patterns of the maize pathogenic fungus, Cercospora zeina in East and Southern Africa.
Fungal Genetics and Biology 149(103527)
10.1016/j.fgb.2021.103527
Van der Nest M, Hlongwane N, Hadebe K,
Chan W,
Van der Merwe N,
De Vos L, Greyling B, Kooverjee B, Soma P, Dzomba E, Bradfield M, Muchadeyi F. (2021)
Breed ancestry, divergence, admixture, and selection patterns of the Simbra crossbreed.
Frontiers in Genetics 11:1796.
10.3389/fgene.2020.608650
Hurley BP. (2021)
The enemy of my enemy is my friend.
TIP-MAG (2):4-6.
Geiser DM, Al-Hatmi A, Aoki T, Arie T, Balmas V,
Barnes I, Bergstrom GC, Bhattacharyya MKK, Blomquist CL, Bowden R, Brankovics B, Brown DW, Burgess LW, Bushley K, Busman M, Cano-Lira JF, Carrillo JD, Chang HX, Chen CY, Chen W, Chilvers MI, Chulze SN, Coleman JJ, Cuomo CA,
de Beer ZW, de Hoog GS, Del Castillo-Múnera J, Del Ponte E, Diéguez-Uribeondo J, Di Pietro A, Edel-Hermann V, Elmer WH, Epstein L, Eskalen A, Esposto MC, Everts KL, Fernández-Pavía SP, da Silva GF, Foroud NA,
Fourie G, Frandsen RJN, Freeman S, Freitag M, Frenkel O, Fuller KK, Gagkaeva T, Gardiner DM, Glenn AE, Gold S, Gordon T, Gregory NF, Gryzenhout M, Guarro J, Gugino B, Gutiérrez S, Hammond-Kosack K, Harris LJ, Homa M, Hong CF, Hornok L, Huang JW, Ilkit M, Jacobs A, Jacobs K, Jiang C, Jimenez-Gasco MDM, Kang S, Kasson MT, Kazan K, Kennell JC, Kim H, Kistler HC, Kuldau GA, Kulik T, Kurzai O, Laraba I, Laurence MH, Lee TY, Lee YW, Lee YH, Leslie JF, Liew ECY, Lofton LW, Logrieco A, Sánchez López-Berges M, Luque AG, Lysøe E, Ma LJ, Marra RE, Martin FN, May SR, McCormick S, McGee CT, Meis JF, Migheli Q, Mohamed Nor NMI, Monod M, Moretti A, Mostert D, Mulé G, Munaut F, Munkvold GP, Nicholson P, Nucci M, O'Donnell K, Pasquali M, Pfenning LH, Prigitano A, Proctor R, Ranque S, Rehner S, Rep M, Rodríguez-Alvarado G, Rose LJ, Roth MG, Ruiz-Roldán C, Saleh AA, Salleh B, Sang H, Scandiani M, Scauflaire J, Schmale D 3, Short DP, Šišić A, Smith J, Smyth CW, Son H, Spahr E, Stajich JE,
Steenkamp E, Steinberg C, Subramaniam R, Suga H, Summerell BA, Susca A, Swett CL, Toomajian C, Torres-Cruz TJ, Tortorano AM, Urban M, Vaillancourt LJ, Vallad GE, van der Lee T, Vanderpool D, van Diepeningen AD, Vaughan M, Venter E, Vermeulen M, Verweij PE, Viljoen A, Waalwijk C, Wallace EC, Walther G, Wang J, Ward T, Wickes B, Wiederhold NP,
Wingfield MJ, Wood AKM, Xu JR, Yang XB, Yli-Matilla T, Yun SH, Zakaria L, Zhang H, Zhang N, Zhang S, Zhang X. (2021)
Phylogenomic analysis of a 55.1 kb 19-gene dataset resolves a monophyletic Fusarium that includes the Fusarium solani Species Complex.
Phytopathology 111(7):1064-1079.
10.1094/PHYTO-08-20-0330-LE
Pillay N, Gerber M, Holan K, Whitham SA,
Berger DK. 2021.
Quantifying the Severity of Common Rust in Maize Using Mask R-CNN. In:
Artificial Intelligence and Soft Computing. ICAISC 2021. Lecture Notes in Artificial Intelligence, vol 12854. Rutkowski L, Scherer R, Korytkowski M, Pedrycz W, Tadeusiewicz R, Zurada J. (eds). Springer, Cham., pp 202-213.
Krivak-Tetley FE, Lantschner MV, Lombardero MJ,
Garnas JR,
Hurley BP, Villacide JM,
Slippers B, Corley J, Liebhold AM, Ayers MP. (2020)
Aggressive tree killer or natural thinning agent? Assessing the impacts of a globally important forest insect.
Forest Ecology and Management
10.1016/j.foreco.2020.118728
Slippers B. (2020)
The Plant Disease Pyramid: The relevance of the original vision of plant pathology in 2020.
South Africa Journal of Science 116(11/12)
10.17159/sajs.2020/9011
van der Waals JE,
Kruger K. (2020)
Emerging potato pathogens affecting food security in southern Africa: Recent research.
South African Journal of Science 116(11/12)
10.17159/
Garnas JR,
Vann KE,
Hurley BP. (2020)
Biotic and abiotic effects on density, body size, sex ratio, and survival in immature stages of the European woodwasp, Sirex noctilio.
Ecology and Evolution
10.1002/ece3.6966
Wilken PM, Kharwar RN, Lumbsch HT, Navathe S, Pérez CA, Ramírez-Berrutti N, Sharma R, Sun Y,
Wingfield BD, Huhndorf S,
Duong TA,
Aylward J, Chand R, Grewe F,
Lane FA, Sinha S, Ametrano C, Distefano I, Divakur PK,
Wingfield MJ. (2020)
Draft genome sequences of Ambrosiella cleistominuta, Cercospora brassicicola, C. citrullina, Physcia stellaris and Teratosphaeria pseudoeucalypti..
IMA Fungus 11(19)
10.1186/s43008-020-00039-7
O'Donnel K, Al-Hatmi AMS, Aoki T, Brankovics B, Cano-Lira JF, Coleman JJ, de Hoog GS, di Pietro A, Frandsen RJN, Geiser DM, Gibas CFC, Guarro J, Kim HS, Kistler HC, Laraba I, Leslie JF, Lopez-Berges MS, Lysøe E, Meis JF, Monod MM, Proctor RH, Rep M, Ruiz-Roldan C, Šišić A, Stajich JE,
Steenkamp ET, Sumerall BA, van der Lee TAJ, van Diepeningen AD, Verweij PE, Waalwijk C, Ward TJ, Wickes BL, Wiederhold NP,
Wingfield MJ, Zhang N, Zhang SX. (2020)
No to Neocosmospora: Phylogenomic and Practical Reasons for Continued Inclusion of the Fusarium solani Species Complex in the Genus Fusarium.
mSphere 5(5)
10.1128/mSphere.00810-20.
Jactel H, Desprez-Loustau M-L, Battisti A, Brockerhoff E, Santini A, Stenlid J, Björkman C, Branco M, Dehnen-Schmutz K, Douma JC, Drakulic J, Drizou F, Eschen R, Franco JC, Gossner MM, Green S, Kenis M, Klapwijk MJ, Liebhold AM, Orazio C, Prospero S, Robinet C, Schroeder M,
Slippers B, Stoev P, Sun J, van den Dool R,
Wingfield MJ, Zalucki MP. (2020)
Pathologists and entomologists must join forces against forest pest and pathogen invasions.
Neobiota 58:107-127.
10.3897/neobiota.58.54389
Drenkhan R, Ganley B, Martin-Garcia J, Vahalik P, Adamson K, Adamcikova K, Ahumada R, Blank L, Braganca H, Capretti P, Capretti P, Cleary M, Cornejo C, Davydenko K, Diez J, Lehtiharvi H, Dvorak M, Enderle R,
Fourie G, Georgieva M, Ghelardini L, Hantula J, Ioos R, Iturritxa E, Kanetis L, Karpun N, Koltay A, Landera E, Markovskaja S, Mesanza N, Milenkovic I, Musolin D, Musolin D, Nikolaou K, Nowakowske J, Ogris N, Oskay F, Oszaka T, Papazova-Anakieva I, Paraschiv M, Pasquali M, Pecori F, Rafoss T, Raitelaityte K, Raposo R, Robin C, Rodas C, Santini A, Sanz-Ros A, Selikhovkin A, Solla A, Soukainen M, Soulioti N,
Steenkamp E, Tsopelas P, Vemic A, Vettraino A,
Wingfield M, Woodward S, Zamora-Ballesteros C, Mullet M. (2020)
Global geographic distribution and host range of Fusarium circinatum, the causal agent of Pine Pitch Canker.
Forests 11(724):1-38.
10.3390/f11070724
Houbraken J, Samson RA, Hubka V, Kraak B, Meijer M, Wang XC,
Yilmaz N,
Visagie CM, Kocsubé S, Frisvad JC. (2020)
Classification of Aspergillus, Penicillium, Talaromyces and related genera (Eurotiales): an overview of families, genera, subgenera, sections, series and species.
Studies in Mycology 95:5–169.
10.1016/j.simyco.2020.05.002
Murray AE, Freudenstein J, Gribaldo S, Hatzenpichler R, Hugenholtz P, Kämpfer P, Konstantinidis K, Lane CE, Papke RT, Parks DH, Rossello-Mora R, Stott MB, Sutcliffe IC, Thrash JC,
Venter SN, Whitman WB, Acinas SG, Amann RI, Anantharaman K, Armengaud J, Baker BJ, Barco RA, Bode HB, Boyd ES, Brady CL, Carini P, Chain PSG, Colman DR, DeAngelis KM, de los Rios MA, Estrada-de los Santos P, Dunlap CA, Eisen JA, Emerson D, Ettema TJG, Eveillard D, Girguis PR, Hentschel U, HollibaughTJ, Hug LA, Inskeep WP, Ivanova EP, Klenk H, Li W, Lloyd KLG, Löffler FE, Makhalanyane TP, Moser DP,
Palmer M, Parro V, Pedrós-Alió C, Probst AJ, Smits THM, Steen AD,
Steenkamp ET, Spang A, Stewart FJ, Tiedje JM, Vandamme P, Wagner M, Wang F, Hedlund BP, Reysenbach A. (2020)
Roadmap for naming uncultivated Archaea and Bacteria.
Nature Microbiology
10.1038/s41564-020-0733-x
Crous PW,
Wingfield MJ, Schumacher RK, Akulov A, Bulgakov TS, Carnegie AJ, Jurjević Z, Decock C, Denman S, Lombard L, Lawrence DP, Stack AJ, Gordon TR, Bostock RM, Burgess T, Summerell BA, Taylor PWJ, Edwards J, Hou LW, Cai L, Rossman AY, Wöhner T, Allen WC, Castlebury LA,
Visagie CM, Groenewald JZ. (2020)
New and Interesting Fungi. 3.
Fungal Systematics and Evolution 6:157–231.
10.3114/fuse.2020.06.09
