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FABI Events

2017-07-20 08h30
Student Seminars FABI seminar room
Zander Human -The bacterial diversity in the infructescences of Protea repens and the surrounding litter and soil.
Chrizelle Beukes - The impact of whole genome sequencing on rhizobial taxonomy.
Marike Palmer - Genome based metabolic and physiological separation of linkages within Pantoa.

 

2017-07-27 08h30
Student Seminars FABI seminar room
Chairperson: To be advised
Firehiwot Eshetu -to be announced.
Stephan Engelbrecht - to be announced.

Workshops & Symposia

New Publications

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Mostert D, Molina AB, Daniells J, Fourie G, Hermanto C, Chao C-P, Fabregar E, Sinohin VG, Hossain MDS, Masdek N, Visarto P, Rajapakse C, Thanh DT, Thangavelu R, Li C, Yi G, Wei Y, Mostert L, Viljoen A. (2017) The distribution and host range of the banana Fusarium wilt fungus, Fusarium oxysporum f. sp. cubense, in Asia. PLoS ONE 12(7):24. 10.1371/journal.pone.0181630
Jankowiak R, Strzałka B, Bilański P, Linnakoski R, Aas T, Solheim H, Groszek M, De Beer ZW. (2017) Two new Leptographium spp. reveal an emerging complex of hardwood-infecting species in the Ophiostomatales. Antonie van Leeuwenhoek 10.1007/s10482-017-0905-8
Ozturk KI, Chettri P, Dupont P-Y, Barnes I, McDougal RL, Moore GG, Sim A, Bradshaw RE. (2017) Evolution of polyketide synthesis in a Dothideomycete forest pathogen. Fungal Genetics and Biology 10.1016/j.fgb.2017.07.001
Wilken PM, Steenkamp ET, Wingfield MJ, De Beer ZW, Wingfield BD. (2017) Which MAT gene? Pezizomycotina (Ascomycota) mating-type gene nomenclature reconsidered. Fungal Biology Reviews 10.1016/j.fbr.2017.05.003
Bush SJ, Dittrich-Schröder D, Neser S, Gevers C, Baffoe KO, Slippers B, Hurley BP. (2017) First record of Quadristichus mendeli, a parasitoid of Leptocybe invasa, in South Africa. Southern Forests 10.2989/20702620.2017.1318347
Beukes CW, Palmer M, Manyaka P, Chan W-Y, Avontuur JR, Van Zyl E, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Blom J, Whitman WB, Venter SN, Steenkamp ET. (2017) Genome data provides high support for generic boundaries in Burkholderia sensu lato. Frontiers in Microbiology 8 10.3389/fmicb.2017.01154
Hurley BP, Slippers B, Sathyapala S, Wingfield MJ. (2017) Challenges to planted forest health in developing economies. Biological Invasions 10.1007/s10530-017-1488-z
Bouwer MC, Slippers B, Wingfield MJ, Allison JD, Rohwer ER. (2017) Optimization of Pheromone Traps for Coryphodema tristis (Lepidoptera: Cossidae) . Journal of Economic Entomology 10.1093/jee/tox171
Hussey SG, Loots MT, van der Merwe K, Mizrachi E, Myburg AA. (2017) Integrated analysis and transcript abundance modelling of H3K4me3 and H3K27me3 in developing secondary xylem. Scientific Reports 7:3370. 10.1038/s41598-017-03665-1
Wingfield MJ, Barnes I, De Beer ZW, Roux J, Wingfield BD, Taerum SJ. (2017) Novel associations between ophiostomatoid fungi, insects and tree hosts: current status—future prospects. Biological Invasions 10.1007/s10530-017-1468-3
Vivas M, Kemler M, Mphahlele MM, Wingfield MJ, Slippers B. (2017) Maternal effects on phenotype, resistance and the structuring of fungal communities in Eucalyptus grandis. Environmental and Experimental Botany 140:120-127. 10.1016/j.envexpbot.2017.06.002
Miller A, Cai L, Crous PW, De Beer ZW, Hawksworth DL, Hyde KD, Kirk PM, Lücking R, Lumbsch HT, May TW, Rossman AY, Schoch CL, Seifert KA. (2017) Mycologists' committees strongly support changes to the governance of fungal nomenclature. IMA Fungus 8(1):(9)-(11). PDF
Linnakoski R, Forbes KM, Wingfield MJ, Pulkkinen P, Asiegbu FO. (2017) Testing projected climate change conditions on the Endoconidiophora polonica / Norway spruce pathosystem shows fungal strain specific effects. Frontiers in Plant Science 8:883. 10.3389/fpls.2017.00883 PDF
Crous CJ, Burgess TI, Le Roux JJ, Richardson DM, Slippers B, Wingfield MJ. (2017) Ecological disequilibrium drives insect pest and pathogen accumulation in non-native trees. AoB Plants 9:plw081. 10.1093/aobpla/plw081
Mbenoun M, Garnas JR, Wingfield MJ, Begoude Boyogueno AD, Roux J. (2017) Metacommunity analyses of Ceratocystidaceae fungi across heterogeneous African savanna landscapes. Fungal Ecology 28:76-85. 10.1016/j.funeco.2016.09.007
Swart V, Crampton BG, Ridenour J, Bluhm BH, Olivier NA, Meyer JJM, Berger DK. (2017) Complementation of CTB7 in the maize pathogen Cercospora zeina overcomes the lack of in vitro cercosporin production. Molecular Plant-Microbe Interactions First Look Online 10.1094/MPMI-03-17-0054-R
Wingfield MJ, Slippers B, Wingfield BD, Barnes I. (2017) The unified framework for biological invasions: a forest fungal pathogen perspective. Biological Invasions 10.1007/s10530-017-1450-0
Tanui CK, Shyntum DY, Priem SL, Theron J, Moleleki LN. (2017) Influence of the ferric uptake regulator (Fur) protein on pathogenicity in Pectobacterium carotovorum subsp. brasiliense. Plos One 5(12) 10.1371/journal.pone.0177647
Granados GM, McTaggart AR, Barnes I, Rodas CA, Roux J, Wingfield MJ. (2017) The pandemic biotype of Austropuccinia psidii discovered in South America. Australasian Plant Pathology 10.1007/s13313-017-0488-x
Van de Peer Y, Mizrachi E, Marchal K. (2017) The evolutionary significance of polyploidy. Nature Reviews Genetics 18:411-424. 10.1038/nrg.2017.26
Marin-Felix Y, Groenewald JZ, Cai L, Chen Q, Marincowitz S, Barnes I, Bensch K, Braun U, Camporesi E, Damm U, De Beer ZW, Dissanayake A, Edwards J, Giraldo A, Hernández-Restrepo M, Hyde KD, Jayawardena RS, Lombard L, Luangsa-ard J, McTaggart AR, Rossman AY, Sandoval-Denis M, Shen M, Shivas RG, Tan YP, van der Linde EJ, Wingfield MJ, Wood AR, Zhang JQ, Zhang Y, Crous PW. (2017) Genera of phytopathogenic fungi: GOPHY 1. Studies in Mycology 10.1016/j.simyco.2017.04.002
Guo H, Benndorf R, Leichnitz D, Klassen JL, Vollmers J, Görls H, Steinacker M, Weigel C, Dahse H-M, Kaster A-K, De Beer ZW, Poulsen M, Beemelmanns C. (2017) Isolation, biosynthesis and chemical modifications of rubterolones A-F, rare tropolone alkaloids from Actinomadura sp. 5-2. Chemistry – A European Journal 10.1002/chem.201701005
Kolařík M, Hulcr J, Tisserat N, De Beer ZW, Kostovčík M, Kolaříková Z, Seybold SJ, Rizzo DM. (2017) Geosmithia associated with bark beetles and woodborers in the western USA: Taxonomic diversity and vector specificity. Mycologia 10.1080/00275514.2017.1303861
Pavlic-Zupanc D, Maleme HM, Piškur B, Wingfield BD, Wingfield MJ, Slippers B. (2017) Diversity, phylogeny and pathogenicity of Botryosphaeriaceae on non-native Eucalyptus grown in an urban environment: A case study. Urban Forestry & Urban Greening 10.1016/j.ufug.2017.04.009
Venter SN, Palmer M, Beukes CW, Chan W-Y, Shin G, Van Zyl E, Seale T, Coutinho TA, Steenkamp ET. (2017) Practically delineating bacterial species with genealogical concordance. Antonie van Leeuwenhoek 10.1007/s10482-017-0869-8
Marincowitz S, Duong TA, Heiniger U, Wingfield BD, Wingfield MJ, De Beer ZW. (2017) A new Leptographium species from the roots of declining Pinus sylvestris in Switzerland. Forest Pathology 10.1111/efp.12346
Faulkner KT, Hurley BP, Robertson MP, Rouget M, Wilson JRU. (2017) The balance of trade in alien species between South Africa and the rest of Africa. Bothalia 47 10.4102/abc.v47i2.2157
Van der Linde JA, Wingfield MJ, Crous CJ, Six DL, Roux J. (2017) Landscape degradation may contribute to large-scale die-offs of Euphorbia ingens in South Africa. South African Journal of Botany 111:144-152. 10.1016/j.sajb.2017.03.022 PDF
Kenis M, Hurley BP, Hajek A, Cock MJW. (2017) Classical biological control of insect pests of trees: facts and figures. Biological Invasions 10.1007/s10530-017-1414-4
Van der Linde JA, Six DL, Wingfield MJ, Roux J. (2017) Fungi and insects associated with Euphorbia ingens die-off in South Africa. Southern Forests 10.2989/20702620.2016.1263004 PDF
Conlon BH, Mitchell J, De Beer ZW, Carøe C, Gilbert MTP, Eilenberg J, Poulsen M, de Fine Licht HH. (2017) Draft genome of the fungus-growing termite pathogenic fungus Ophiocordyceps bispora (Ophiocordycipitaceae, Hypocreales, Ascomycota). Data in Brief 11:537–542. 10.1016/j.dib.2017.02.051 PDF
Palmer M, Steenkamp ET, Coetzee MPA, Chan W-Y, Van Zyl E, De Maayer P, Coutinho TA, Blom J, Smits THM, Duffy B, Venter SN. (2017) Phylogenomic resolution of the bacterial genus Pantoea and its relationship with Erwinia and Tatumella. Antonie van Leeuwenhoek 10.1007/s10482-017-0852-4
Slippers B, Crous PW, Jami F, Groenewald JZ, Wingfield MJ. (2017) Diversity in the Botryosphaeriales : Looking back, looking forward. Fungal Biology 121(4):307-322. 10.1016/j.funbio.2017.02.002
Fan XL, Barreto RW, Groenewald JZ, Bezerra JDP, Pereira OL, Cheewangkoon R, Mostert L, Tian CM, Crous PW. (2017) Phylogeny and taxonomy of the scab and spot anthracnose fungus Elsinoë (Myriangiales, Dothideomycetes). Studies in Mycology 87:1-41. 10.1016/j.simyco.2017.02.001
Tsopelas P, Santini A, Wingfield MJ, De Beer ZW. (2017) Canker stain: A lethal disease destroying iconic plane trees. Plant Disease 10.1094/PDIS-09-16-1235-FE PDF
Wingfield BD. (2017) What “decolonised education” should and shouldn’t mean. The Conversation http://bit.ly/2llAK7J
Aylward J, Steenkamp ET, Dreyer LL, Roets F, Wingfield BD, Wingfield MJ. (2017) A plant pathology perspective of fungal genome sequencing. IMA Fungus 8(1):1-15. 10.5598/imafungus.2017.08.01.01
Crous PW, Slippers B, Groenewald JZ, Wingfield MJ. (2017) Botryosphaeriaceae: Systematics, pathology, and genetics. Fungal Biology 121(4):305-306. 10.1016/j.funbio.2017.01.003
Giraldo A, Crous PW, Schumacher RK, Cheewangkoon R, Ghobad-Nejhad M, Langer E. (2017) The Genera of Fungi—G3: Aleurocystis, Blastacervulus, Clypeophysalospora, Licrostroma, Neohendersonia and Spumatoria. Mycological Progress 16(4):325-348. 10.1007/s11557-017-1270-8
Human ZR, Slippers B, De Beer ZW, Wingfield MJ, Venter SN. (2017) Antifungal actinomycetes associated with the pine bark beetle, Orthotomicus erosus, in South Africa. South African Journal of Science 113(1/2):2016-0215. 10.17159/sajs.2017/20160215 PDF
Osorio JA, Crous CJ, Wingfield MJ, De Beer ZW, Roux J. (2017) An assessment of mangrove diseases and pests in South Africa. Forestry 10.1093/forestry/cpw063
Mizrachi E, Verbeke L, Christie N, Fierro AC, Mansfield SD, Davis MF, Gjersing E, Tuskan GA, Van Montagu M, Van de Peer Y, Marchal K, Myburg AA. (2017) Network-based integration of systems genetics data reveals pathways associated with lignocellulosic biomass accumulation and processing. PNAS 10.1073/pnas.1620119114 PDF
Burgess T, White D, McDougall K, Garnas J, Dunstan W, Català S, Carnegie A, Worboys S, Cahill D, Vettraino AM, Stukely M, Liew E, Paap T, Bose T, Migliorini D, Williams B, Brigg F, Crane C, Rudman T, Hardy G. (2017) Phytophthora distribution and diversity across Australia. Pacific Conservation Biology 23(1-13) 10.1071/PC16032
Gorshkov V, Kwenda S, Petrova O, Osipova E, Gogolev Y, Moleleki LN. (2017) Global Gene Expression Analysis of Cross-Protected Phenotype of Pectobacterium atrosepticum. PLoS ONE 12(1) 10.1371/journal.pone.0169536
Abate BA, Wingfield MJ, Slippers B, Hurley BP. (2017) Commercialization of Entomopathogenic Nematodes: Should import regulations be revised?. Biocontrol Science and Technology 10.1080/09583157.2016.1278200
Burgess TI, Wingfield MJ. (2017) Pathogens on the Move: A 100-Year Global Experiment with Planted Eucalypts. BioScience 67(1):14-25. 10.1093/biosci/biw146
Weller-Stuart T, De Maayer P, Coutinho T. (2017) Pantoea ananatis: genomic insights into a versatile pathogen. Molecular Plant Pathology 10.1111/mpp.12517
Christie N, Myburg AA, Joubert F, Murray SL, Carstens M, Lin Y-C, Meyer J, Crampton BG, Christensen SA, Ntuli JF, Wighard SS, Van de Peer Y, Berger DK. (2017) Systems genetics reveals a transcriptional network associated with susceptibility in the maize-gray leaf spot pathosystem. The Plant Journal 89(4):746-763. 10.1111/tpj.13419
Denman S, Barrett G, Kirk SA, McDonald JE, Coetzee MPA. (2017) Identification of Armillaria species on declined oak in Britain: implications for oak health. Forestry 90(1):148-161. 10.1093/forestry/cpw054
Fru FF, Emma Steenkamp, Michael J. Wingfield, Santana QC , Roux J. (2017) Unique clones of the pitch canker fungus, Fusarium circinatum, associated with a new disease outbreak in South Africa. European Journal of Plant Pathology 148(1):97-107. 10.1007/s10658-016-1073-9