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Summary

Armillaria root rot

Armillaria spp. have a wide host range. In South Africa, Armillaria root rot has been recorded on many hosts including commercially-grown forest species such as pines and eucalypts. It also occurs on fruit trees such as apples, peaches and citrus and on many indigenous forest tree species. When indigenous forest is cleared for afforestation, the fungus colonizes stumps, which serve as an inoculum base for the pathogen from which it can then infect plantation species.

For many years, Armillaria root rot has been ascribed to the pathogen Armillaria mellea. Recent research has shown that A. mellea is an 'aggregate' species including many discrete biological entities. The species most commonly occurring in forest plantations in South Africa is A. fuscipes (Coetzee et al., 2000).

Trees in plantations with Armillaria root rot are usually found in distinct infection centres radiating out from a single infected tree. Infection centres develop owing to the capacity of the pathogen to move from tree to tree by root contacts. Dying trees are, therefore, usually found at the periphery of the infection centres. Armillaria species can also be opportunistic and infect trees dying of other causes. In this case, infected trees are usually scattered in plantations.

Trees dying of Armillaria root rot usually have yellow (chlorotic) needles and leaves. This symptom is most evident at the end of the dry season. A flush crop of cones is often produced on dying conifers. In addition, resin or gum is usually found exuding from roots and root collars of infected trees. On eucalypts and A. mearnsii the bark at the bases of infected trees often cracks and splits open.

Armillaria root rot is commonly recognised by characteristic signs of the fungus. These include a thick mat of white mycelium under the bark of roots and root collars of dead and dying trees. White "fans' of mycelium may also be present. Other signs of the disease can be the presence of black "shoe-lace-like" rhizomorphs and the production of sporophores (mushrooms) near or on dying trees. Rhizomorphs (fungus roots) are structures that facilitate the movement of the fungus through the soil and from tree to tree. These are not commonly seen in South Africa. Sporophores usually have honey-coloured caps and white gills and are produced in groups at the base of dying trees. They usually occur in spring and are short-lived and thus seldom seen.

Pseudophaeolus root rot

Pseudophaeolus baudonii (Polyporus baudonii) is found only in Africa and occurs on many woody plants including indigenous and non-native trees. In South Africa, the disease caused by this fungus is known only from Zululand and all indications are that it is restricted to warm areas. In Zululand, P. baudonii is found in a small number of infection centres in pine and eucalypt plantations (Wingfield and Knox-Davies 1980). Pseudophaeolus baudonii moves from one infected tree to adjacent trees by root contacts and the symptoms of the resulting root disease are similar to those of Armillaria root rot.

Root disease caused by P. baudonii can be distinguished from other root diseases by the presence of white to yellow mycelial fans under the bark at the base of infected trees. The pathogen also produces large yellow sporophores that develop from infected roots near the base of infected trees in spring.

Phytophthora and Pythium root diseases

Phytophthora and Pythium species are Oomycetous water-borne micro-organisms that include some of the world's most notorious plant pathogens. These organisms, like many other root pathogens, have a wide host range and, in the case of Phytophthora, this includes many species of woody plants and forest trees. They usually do not move from infected to adjacent trees by root contacts. They rather produce motile spores that move in soil water. Dying trees are usually scattered in plantations, although small patches can also be present. Roots of diseased trees have rotten bark, which easily slips off woody parts.

The most obvious symptom on trees infected with Phytophthora and Pythium species is a general wilting of the leaves. This can be preceded by a reddening and then chlorosis of the leaves. Rapid wilting is characteristic of trees that have become girdled at the root collar, particularly during hot and comparatively dry periods in summer.

Phytophthora root disease has been found on various species of pines and eucalypts, as well as on wattle in South Africa (Linde et al., 1994). On pines, P. cinnamomi is the most common species associated with disease. In many cases, inoculum has been transferred with plants from infected nurseries. Severe disease has been recorded on Pinus radiata on poorly-drained sites in the southern Cape and on a trial planting of P. clausa in Zululand.

A number of Eucalyptus species including E. fastigata, E. fraxinoides, E. smithii and E. nitens are known to suffer from serious root and root collar disease problems caused by P. cinnamomi. The current view is that the disease is of a complex nature and recent research has identified at least three other Phytophthora spp. involved with disease of eucalypts in South Africa.

Basal canker and gummosis is a common disease of Acacia mearnsii in South Africa. In many cases, this disease is caused by Phytophthora nicotianae. A number of other Phytophthora spp. are associated with basal canker on wattle. There are indications that, where wattle planting has preceded establishment of eucalypts, P. nicotianeae can cause disease of these trees.

Pythium splendens has caused severe losses in young E. grandis clones in Zululand. Symptoms of this disease are similar to those associated with Phytophthora spp.

Serious problems have been experienced in establishing pines on old agricultural lands in the Eastern Cape. This disease problem is absent in plantings on adjacent virgin lands. Pythium irregulare is consistently associated with, and believed to be one of the important factors contributing to this disease. Indications are that populations of this pathogen have built up on previous rotations of agricultural crops.

Rhizina root disease

Rhizina undulata causes "group dying" of conifers on burnt sites (Wingfield and Knox-Davies 1980; Germishuizen 1984). Sporophores of the fungus are irregularly lobed, red to dark brown and are formed after fires in pine plantations or on areas that have been clearfelled and burnt. In Southern Africa, Rhizina root disease has been serious, particularly in the Mpumalanga, KwaZulu-Natal Midlands, North Eastern Cape and Swaziland where seedlings have been planted shortly after slash burning. The disease is specific to conifers and can only be recognised by its association with fires and the presence of sporophores of the fungus, which are a red brown colour when fresh and turn dark brown to black as they dry out. The disease occurs only where there has been a previous rotation of pines. Thus, burning of veld or indigenous brush prior to planting poses no danger.

New Publications

Schertler A, Lenzner B, Dullinger S, Moser D, García-Rodríguez A, Krisai-Greilhuber I, Voglmayr H, Bufford JL, Santini A, Ghelardini L, Capinha C, Reino L, Wingfield MJ, Thines M, Talhinhas P, Dawson W, van Kleunen M, Kreft H, Pergl J, Pyšek P, Weigelt P, Winter M, Essl F. (2026) Are novel and co-xenic associations common in alien fungal and fungus-like plants pathogens?. New Phytologist 10.1111/nph.71455
Thango S, Nsibo DL, Berger DK, Visagie CM, Slippers B. (2026) Phenotypic variation in the in vitro and in planta aggressiveness traits among Exserohilum turcicum strains from South Africa. Plant Pathology 75(4):e70257. 10.1111/ppa.70257
Bradshaw MJ, Paul A, Villani S, Bensch K, Mitchell KJ, Pfister DH, Visagie CM, Garfinkel AR, Quesada-Ocampo L, Aime MC, Braun U. (2026) Modern taxonomy as the foundation for identifying and managing fungal and fungus like plant pathogens. Plant Disease 10.1094/PDIS-12-25-2537-FE
Balocchi F, Wingfield MJ, Paap T. (2026) Occurrence of Phytophthora cinnamomi in the rhizosphere of declining Leucadendron elimense subsp. salteri in South Africa. Forest Pathology 56(4):e70097. 10.1111/efp.70097 PDF
Pham NQ, Wingfield BD, Marincowitz S, Marpaung YMAN, Selebi AP, Tarigan M, Wingfield MJ. (2026) A novel Cryphonectria species (Cryphonectriaceae, Diaporthales) discovered on Eucalyptus, including insights into the mating biology of the genus. Fungal Biology 130:101831. 10.1016/j.funbio.2026.101831
Kim JS, Lee W, Seo CW, Lee JW, Perera RH, Rho SM, Visagie CM, Houbraken J, Lim YW. (2026) A comprehensive assessment of Penicillium diversity in marine environments. Studies in Mycology 115:1–57. 10.3114/sim.2026.115.01
Jami F, Truter M, Pavlic M, Chen SF, Roux J. (2026) Identification of Botryosphaeriaceae species in the South African National Collection of fungi, including a novel species of Oblongocollomyces. African Biodiversity & Conservation 56(1):1-13. PDF
Vettraino AM, Bose T. (2026) Urban green spaces as emerging hotspots for Phytophthora diversity: a global synthesis of host associations, distribution and management gaps. Frontiers in Forests and Global Change 9:1872981. 10.3389/ffgc.2026.1872981
Burgess TI, Wingfield MJ. (2026) Unveiling a hidden menace: Invasive tree pathogens, less known but increasingly threatening Southern hemisphere forests. Annual Review of Phytopathology 64 10.1146/annurev-phyto-011325-100959
Motete T, Solís M, Hammerbacher A, Naidoo S. (2026) Gene expression profiling in Eucalyptus associates Phenylpropanoid resistance to Teratosphaeria destructans. Plant Pathology 10.1111/ppa.70207
Aylward J, Atkins S, Roets F, Danti R, Della Rocca G, Emiliani G, Fraser S, Garbelotto MM, Herron DA, Scali E, Wingfield BD, Wingfield MJ. (2026) High genetic diversity in the Cypress canker pathogen Seiridium cardinale in the Southern Hemisphere. Plant Pathology 75 10.1111/ppa.70212
van Heerden A, Pham NQ, Duong TA, Wingfield MJ, Wingfield BD. (2026) Draft genome sequence of Ganoderma philippii, a serious root rot pathogen of Eucalyptus in Southeast Asia. Australasian Plant Pathology 55:81. 10.1007/s13313-026-01159-1
Schoeman C, Roodt D, Mc Menamin A, Bezuidt O, Dithugoe C, Pinard D, Mizrachi E. (2026) Conserved symbiosis-associated genes in the cycad Encephalartos natalensis suggest co-option for cyanobacterial symbiosis. New Phytologist 10.1111/nph.71311
Townsend G, Hill M, Hurley BP, Roets F. (2026) Native Scolytinae and Platypodinae beetle assemblages in indigenous South African forests and their co-occurrence with the invasive PSHB beetle. Journal of Insect Conservation 30 10.1007/s10841-026-00779-8
Botha I, Maduna SN, Hagen SB, Lall N, Berger DK. (2026) 3RAD-guided SNP discovery for species identification and conservation of the medicinal southern African tree Genus Greyia Hook. & Harv.. Ecology and Evolution 16(5):e73412, 1-29. 10.1002/ece3.73412
Balocchi F, Duncan G, Yilmaz N, Wingfield MJ, Paap T. (2026) The critically endangered geophyte Gladiolus aureus threatened by a wilt disease associated with Fusarium libertatis. Journal of Plant Pathology 10.1007/s42161-026-02227-7 PDF
Bose T, Wingfield MJ. (2026) Plantations are invasive pathogen bridgeheads—response to Li et al.. Trends in Ecology & Evolution 10.1016/j.tree.2026.05.006
Jamieson B-A, Paap T, Pegg GS, Carnegie AJ, Wingfield MJ, Roux J, Hardy GEStJ, Drenth A, Hammerbacher A, Bose T. (2026) Quambalaria spp.: Emerging Tree Pathogens of Concern. Current Forestry Reports 12:13. 10.1007/s40725-026-00274-y
Masuku SK, De Vos L, Thabiso TE, Steenkamp ET, Wingfield BD. (2026) Baseline sensitivity of South African Fusarium circinatum to tebuconazole. Journal of Plant Pathology 10.1007/s42161-026-02197-w
Fitawek W, Anjulo A, Healey M, Lawson SA, Hurley BP. (2026) The Moringa value chain in Ethiopia and the socio-economic impact of pests and diseases. CABI Agriculture and Bioscience 10.1079/ab.2026.00041 PDF
Lynn KMT, Wingfield MJ, Oliveira LSS, Alfenas AC, Ferreira Alfenas RF, Marincowitz S, Barnes I. (2026) Phylogenetic and population genetic analyses reveal patterns of divergence amongst isolates of Ceratocystis manginecans. Ecology and Evolution 16 10.1002/ece3.73652
Dlamini CM, Matongera TN, Lawson SA, Healey M, Tanga A, Regasa K, Kassie W, Hurley BP, Germishuizen I. (2026) Modelling spatiotemporal dynamics of wattle plantations in northwestern Ethiopia using harmonised PlanetScope and RapidEye imagery. Trees, Forests and People 25:101293. 10.1016/j.tfp.2026.101293 PDF
Ndou M, Potts WM, Duong TA, Teske PR, Childs AR, Henriques R. (2026) Conspecific scaffold-level genome assembly outperforms heterospecific chromosome-level assemblies for assessing genetic indicators in a threatened marine fish. Evolutionary Applications 19:e70247. 10.1111/eva.70247
Marx B, van Dijk A, Steenkamp ET, Wingfield MJ, Wingfield BD. (2026) Breaking the mould: Cellulose in the cell walls of the Ophiostomatales. Fungal Biology Reviews 57 10.1016/j.fbr.2026.100489
Wingfield BD, Coetzee MPA, Wingfield BJ, Groenewald M, Pohl C, Wingfield MJ. (2026) The genetic blueprint of Cyclohexamide resistance: Analysis of 816 yeast species. Research Square 10.21203/rs.3.rs-9313202/v1
Paap T, White D, Bose T, Burgess TI. (2026) Diversity and phylogeny of Phytophthora Clade 9, including descriptions of three novel species. Mycological Progress 25:29. 10.1007/s11557-026-02140-4
Kgatla MM, Barker C, Baxter JR, Bester-van der Merwe AE, Chaisi M, Chakona A, Cherry MI, Daniels SR, Du Preez LH, Haddad CR, Hawkes PG, Ho C, Hoareau TB, Jacobs A, Jacobs K, Janion-Scheepers C, Jansen van Vuuren B, Kabongo RM, Khoza TT, Khumalo NL, Mahlanza T, Makapela L, Makhubo BG, Maneveldt GW, Mashego K, Matcher G, Matthee CA, Mavhunga M, Midgley JM, Mlambo M, Monsanto DM, Mthombeni R, Murray SL, Mynhardt S, Nang-Mba B, Ndlovu M, Parbhu SP, Phetla V, Phukuntsi M, Pitcher TR, Samaai T, Sethusa MT, Simon CA, Sink K, Sole CL, Theron GL, van Asch B, van der Bank M, van Steenderen CJM, Villet MH, Visagie CM, Williams KA, Willows-Munro S, Da Silva JM, Mwale M. (2026) An overview of DNA barcoding of biodiversity in South Africa. PLOS ONE 21(4):e0345173. 10.1371/journal.pone.0345173
Li GQ, Slippers B, Wingfield MJ, Chen SF. (2026) Diversity, distribution and host range of Botryosphaeriaceae in China. Forest Pathology 10.1111/efp.70077
Joubert M, van den Berg N, Theron J, Swart V. (2026) Leaf bleaching is associated with extensive transcriptional reprogramming in avocado trees with sunblotch disease. Virology 620:110903. 10.1016/j.virol.2026.110903 PDF
Nzuza P, Schroder ML, Slippers B, Maes WH. (2026) Spectral responses to larval and artificial defoliation in Eucalyptus dunnii: Implications for UAV-based detection of Gonipterus damage. Drones 10(4) 10.3390/drones10040250
Six DL, Marincowitz S, Duong TA. (2026) Ophiostoma ipsi-confusi sp. nov. Six, Marinc. & Duong, a consistent symbiotic fungus of the pinyon ips bark beetle, Ips confusus LeConte. Symbiosis 10.1007/s13199-026-01135-9
Yan Z, Zhao Y, Meng X, Gao M, Si H, Zhao G, Bose T, Chang R. (2026) New manganese-oxidizing Acremonium-like fungi from halophytic rhizospheres in the Yellow River Delta, China. Mycologia :1-13. 10.1080/00275514.2026.2627133
Eshetu FB, Barnes I, Nahrung HF, Fitza KNE, Slippers B. (2026) A Century of invasion: How biosecurity influenced populations of Sirex noctilio and Its fungal symbiont in Australasia. Molecular Ecology 35(6):0962 - 1083. 10.1111/mec.70311
Viljoen A, Duong TA, Kanzi AM, Wingfield BD. (2026) Comparative analysis of mitochondrial genomes in the Ceratocystidaceae reveals highly conserved gene organization despite substantial genome size variation. BMC Genomics 10.1186/s12864-026-12755-2
Ribeiro MF, Cavallini G, Solce GN, Favoreto AL, De Souza Passos J-R, Barbosa LR, Hurley BP, Wilcken CF. (2026) Cold storage of Gonipterus platensis (Coleoptera: Curculionidae) eggs for Anaphes nitens (Hymenoptera: Mymaridae) rearing. PeerJ :1-14. 10.7717/peerj.20903 PDF
Pham NQ, Marincowitz S, Marpaung YMAN, Tarigan M, Wingfield BD, Wingfield MJ. (2026) Two Cryphonectriaceae species from Eucalyptus leaves in North Sumatra and their stem inoculation outcomes. Fungal Systematics and Evolution 17:69–79. 10.15761/fuse.2026.17.05 PDF
Nickles GR, Stokes CK, Narh DL, Lynn KMT, Fuqua SR, Bryan C, Allen BM, Bivins CP, Bok JW, Brewer JS, Buthelezi ST, Clark JPRM, Coon KL, Corby LR, Coetzee MPA, Dewing C, Duong TA, Harris MA, Keller NP, Kopotsa K, Lane FA, Nichols HL, Nieuwoudt A, Nuñez MA, Medina Munoz ME, Park SC, Pham NQ, Ryan KT, Solís M, Vilgalys R, Wallace JM, Wang YW, Wingfield BD, Wingfield MJ, Worley TK, Zallek TA, Zamanian M, Hoeksma JD, Drott M, Pringle A. (2026) Equipped for success: Genomes and metabolites of the European Amanita muscaria are conserved in its novel South African range. New Phytologist 10.1111/nph.71064
Pham NQ, Wingfield MJ, Duong TA, Wingfield BD. (2026) Draft genome sequence of Elsinoe masingae: the causal agent of Eucalyptus scab in South Africa. Australasian Plant Pathology 55:37. 10.1007/s13313-026-01082-5
Pham NQ, Marincowitz S, Wingfield BD, Crous PW, Santos SA, Durán A, Tarigan M, Wingfield MJ . (2026) Pseudoteratosphaeria supramediana sp. nov. (Teratosphaeriaceae, Mycosphaerellales), a new foliar pathogen on Eucalyptus in Indonesia. Australasian Plant Pathology 55:28. 10.1007/s13313-026-01092-3
Nel WJ, Jali S, Barnes I, Wondafrash M, Hurley BP. (2026) Outbreaks of a native jewel beetle, Agrilus grandis (Coleoptera: Buprestidae), on commercial black wattle, Acacia mearnsii, plantations in South Africa. African Entomology 34(1):1-5. 10.17159/2254-8854/2026/a24625
Postma A, Klynsmith L, Duong TA, Allison JD, Smidt W, Waterhouse RM, Lesny P, Oeyen JP, Petersen M, Martin S, Liu S, Zhou X, Ziesmann T, Donath A, Mayer C, Misof B, Niehuis O, Peters RS, Podsiadlowski L, Coetzee MPA, Joubert F, Slippers B. (2026) Genome and transcriptome-based identification and expression profiling of chemosensory gene families across developmental stages and tissues in Sirex noctilio (Hymenoptera: Siricidae). Insect Molecular Biology :1-14. 10.1111/imb.70029
Aylward J, Visagie CM, Roets F, Wingfield BD, Wingfield MJ. (2026) Genome analyses reveal two novel species of Seiridium from Acacia mearnsii. Mycological Progress 25:8. 10.1007/s11557-026-02121-7
Liu QL, Wingfield MJ, Duong TA, Wingfield BD, Crous PW. (2026) Taxonomy, distribution and dispersal of Calonectria species: Important pathogens of forestry, agricultural and horticultural crops. Current Forestry Reports 12(4) 10.1007/s40725-025-00262-8
Carstens M, Pliego C, Norval A, van den Berg N. (2026) Dematophora necatrix: From taxonomy to molecular advances. Fungal Biology Reviews 55:100471. 10.1016/j.fbr.2026.100471 PDF
Nethononda PD, Hurley BP, Slippers B, Makhura MN. (2026) Smallholder farmers’ knowledge, perception and management of Spodoptera frugiperda (Lepidoptera: Noctuidae) on Zea mays at irrigation schemes in Limpopo province, South Africa. Crop Protection :107457. 10.1016/j.cropro.2025.107457
Karsten M, Fourie G, Roets F, Javal M, Terblanche J, Dittrich-Schröder G, Bierman A. 2026. Genetic Toolkits for IPM. In: Principles of Integrated Pest Management. Terblanche J, Karsten M. (eds). CABI, pp 294-319. PDF
Swanepoel S, Naidoo S. (2026) A weighted gene co-expression network analysis characterises the common defence responses of Eucalyptus to diverse biotic challenges. Scientific Reports 16:5387. 10.1038/s41598-025-32699-z
Addikah C, Abubeker H, Mukiibi A, Bairu M, Amelework A, Van der Laan M, Mangani R. (2026) Current and future potential of cassava (Manihot esculenta) in Southern Africa: a scoping review. 4:120. 10.1007/s44279-026-00598-0
Bornman S, Read D, Wingfield B, Wilken M. (2026) Unveiling the hidden virome of Sclerotinia sclerotiorum: New tools and discoveries in mycovirus detection. Virology 623:111020. 10.1016/j.virol.2026.111020
Botha I, De Canha MN, Oberlander K, Botes J, Lall N, Berger DK. (2025) DNA barcoding and anti-tyrosinase activities of three species-representative populations of the genus Greyia Hook & Harv. South African Journal of Botany 189:55-67. 10.1016/j.sajb.2025.11.035