Phylogenetic workshops are presented under the auspices of the CTHB and focus on the theoretical and applied aspects of the majority of methods used to infer phylogenetic relationships amongst organisms. These workshops were initiated in 2004 after a realization that most researchers have limited experience in the practical application of evolutionary models and tree building algorithms, as well as the execution of computer software used for the analyses. A major objective for the workshops has been to provide "hands on" experience in the use of databases available on the world-wide-web and the different software, both commercial and freeware, currently available for evolutionary biologists. The workshops are now separated into an Introductory Phylogenetic Workshop, managed by Dr Jane Wright and an Advanced Phylogenetic Workshop, managed by Dr Martin Coetzee, and are presented biannually.
Phylogenetic Workshops
New Publications
Nethononda PD, Hurley BP, Slippers B, Makhura MN. (2026) Smallholder farmers’ knowledge, perception and management of Spodoptera frugiperda (Lepidoptera: Noctuidae) on Zea mays at irrigation schemes in Limpopo province, South Africa. Crop Protection :107457.
10.1016/j.cropro.2025.107457
Roux J, del M Angel L, Barnes I. (2025) First report of the eucalypt stem canker pathogen Teratosphaeria gauchensis in South Africa. New Disease Reports 52(2):e70091.
10.1002/ndr2.70091
Nel WJ, Barnes I, Jali S, Impson F, Oberprieler RG, Hurley BP. (2025) First report of Melanterius inconspicuus (Coleoptera: Curculionidae: Cleogonini) from KwaZulu-Natal, South Africa, with observations of its development in black wattle. Southern Forests
10.2989/20702620.2025.2537823 
Regasa K, Beze W, Anjulo A, Wondafrash M, Hurley BP, Lawson SA, Healey M, Germishuizen I. (2025) Evaluating fungicides for the management of rust (Uromycladium acaciae) on black wattle nursery seedlings in Awi zone, Amhara regional state, Ethiopia. International Journal of Forestry Research
10.1155/ijfr/5547814
Wilson AM, Wingfield MJ, Duong TA, Wingfield BD. (2025) Thermotolerance and post-fire growth in Rhizina undulata is associated with the expansion of heat stress-related protein families. BMC Genomics 26:1041.
10.1186/s12864-025-11902-5
Fuchs T, Vismer HF, Visagie CM, Wingfield BD, Wingfield MJ. (2025) Low genotypic diversity and first reports of clinical Sporothrix from retrospective samples in South Africa. Medical Mycology
10.1093/mmy/myaf102
Yilmaz N, Verheecke-Vaessen C. (2025) Mycotoxins: An ongoing challenge to food safety and security. PLOS Pathogens 21(11)
10.1371/journal.ppat.1013672
Coelho MA, David-Palma M, Kachalkin AV, Kolařík M, Turchetti B, Sampaio JP, Wingfield MJ, Fisher MC, Yurkov AM, Heitman J. (2025) Genomic and phenotypic insights into the expanding phylogenetic landscape of the Cryptococcus genus. PLOS Genetics 21(11)
10.1371/journal.pgen.1011945
Shaw PL, Slippers B, Wingfield BD, Laurent B, Penaud B, Wingfield MJ, Crous PW, Bihon W, Duong TA. (2025) Chromosome-level genome assemblies for the latent pine pathogen, Diplodia sapinea, reveal two accessory chromosomes with distinct genomic features and evolutionary dynamics. G3 Genes|Genomes|Genetics :jkaf239.
10.1093/g3journal/jkaf239
Visagie CM, Houbraken J, Overy DP, Sklenář F, Bensch K, Frisvad JC, Mack J, Perrone G, Samson RA, van Vuuren NI, Yilmaz N, Hubka V. (2025) From chaos to tranquillity: a modern approach to the identification, nomenclature and phylogeny of Aspergillus, Penicillium and other Eurotiales, including an updated accepted species list. Studies in Mycology 112:117–260.
10.3114/sim.2025.112.04
Maake MM, Beukes CW, van der Nest MA, Avontuur JR, Muema EK, Stepkowski T, Venter SN, Steenkamp ET. (2025) Argyrolobium legumes from an African centre of endemism associate with novel Bradyrhizobium species harbouring unique sets of symbiosis genes. Molecular Phylogenetics and Evolution 214:108471.
10.1016/j.ympev.2025.108471
Joubert M, van den Berg N, Theron J, Swart V. (2025) Small RNAs derived from avocado sunblotch viroid and their association with bleaching symptoms: implications for pathogenesis in avocado sunblotch disease. Archives of Virology 170(10):205.
10.1007/s00705-025-06360-z
Mavima L, Steenkamp ET, Beukes CW, Palmer M, De Meyer SE, James EK, Venter SN, Coetzee MPA. (2025) Estimated timeline for the evolution of symbiotic nitrogen fixing Paraburkholderia. Molecular Phylogenetics and Evolution 213:108447.
10.1016/j.ympev.2025.108447
Pham NQ, Liu FF, Duong TA, Wingfield BD, Chen SF, Wingfield MJ. (2025) Genetic diversity of Calonectria reteaudii isolates from infected Eucalyptus leaves and associated soils indicates a phyllosphere origin of the pathogen. Forest Pathology 55:e70037.
10.1111/efp.70037
Schröder ML, Hurley BP, Wingfield MJ, Slippers B, Garnas JR. (2025) Thermal limitations to the biological control of Gonipterus sp. n. 2 (Coleoptera: Curculionidae) in South African Eucalyptus plantations. Agricultural and Forest Entomology
10.1111/afe.70002
Lynn KMT, Wingfield MJ, Tarigan M, Durán A, Santos SA, Nel WJ, Barnes I. (2025) Investigating bark, ambrosia and nitidulid beetle (Coleoptera: Scolytinae and Nitidulidae) communities and their potential role in the movement of Ceratocystis manginecans in commercial forestry plantations in Riau, Indonesia. Agricultural and Forest Entomology
10.1111/afe.12698
Solís M, Hammerbacher A, Wingfield MJ, Naidoo S. (2025) Transcriptional responses of Eucalyptus to infection by an aggressive leaf blight pathogen reveal the role of host secondary metabolites during pathogen germination. Plant Molecular Biology 115
10.1007/s11103-025-01625-2
Coertze S, Coetzee B, Basson E, de Villiers D, Makhura T, Moster D, Slippers B, Rose LJ, Visagie CM, Read D. (2025) First Report of Clavibacter nebraskensis Causing Goss’s Bacterial Leaf Blight on Maize (Zea mays) in South Africa. Plant Disease 109:1580.
10.1094/PDIS-01-25-0164-PDN
Overy DP, Frisvad JC, Witte TE, Hicks CL, Hermans A, Sproule A, Louis-Seize G, Seifert KA, Yilmaz N, Price J, van Vuuren NI, Visagie CM. (2025) Chemodiversity of Penicillium isolated from alpine and arctic environments, including ten new species. Studies in Mycology 112:75–116.
10.3114/sim.2025.112.03
Mailula DM, Wingfiled BD, Van Der Nest MA, Hammerbacher A. (2025) Production of fusel alcohols and fusel acetates by pathogenic fungi in the Ceratocystidaceae. Fungal Ecology 76:101427.
10.1016/j.funeco.2025.101427