FABI News
1 Apr 2026
FABIans attend the third biennial CIFAR Fungal Kingdom Satellite Meeting
Researchers from the FABI recently attended the third biennial CIFAR Fungal Kingdom Satellite Meeting held in Pacific Grove, USA
31 Mar 2026
Easter Tea fun at FABI
FABIans enjoyed their annual Easter Tea event on 26 March
31 Mar 2026
Prof. Bernard Slippers participates in the Alexander von Humboldt Foundation Research Award Symposium
FABI Director, Prof. Bernard Slippers attended the Alexander von Humboldt Foundation Research Award Symposium as one of ten recipients of this prestigious Award in 2026
30 Mar 2026
Its Kiwifruit harvesting time and the KPP team wraps up another season!
Members of the Kiwifruit protection Programme in FABI recently made site visits to orchards in Limpopo's and KwaZulu-Natal.
27 Mar 2026
A fascinating Special Seminar by Dr Joey Tanney
FABI was honoured to host a special seminar by Natural Resources Canada’s Dr Joey Tanney.
FABI in a nutshell
Research Features
Tracing the past, building the future: FABI research unlocks the genetics and genomics of the Sirex woodwasp complex
FABI researcher co-authors global perspective on mycotoxins and food safety.
FABI researchers Prof. Cobus Visagie, Dr Neriman Yilmaz, and Nicole van Vuuren, together with international collaborators, have published a comprehensive taxonomic revision of the fungal order Eurotiales, which includes the economically important genera Aspergillus, Penicillium, and Talaromyces.
New publication explores the chemodiversity of Penicillium isolated from alpine and arctic environments, including ten new species.
Review emphasizes the importance of understanding the genetics of sex determination for effective genetic pest management in insects.
Eleven new Penicillium and Talaromyces species discovered in South African culture collections.
A new study reveals the presence of Mycotoxins in Eastern Cape maize in South Africa.
Eurotiales update: FABIans Prof. Cobus Visagie and Dr Neriman Yilmaz and their collaborators have published a review of recently described Eurotiales species, including the economically important Aspergillus, Penicillium, Paecilomyces and Talaromyces.
Da Vinci's Yeast: FABIans Prof. Cobus Visagie, Dr Neriman Yilmaz, and their collaborators have recently described and named a newly discovered yeast species of the famous Italian painter, draughtsman, engineer, scientist, theorist, sculptor, and architect Leonardo da Vinci.
The potential economic impact of the PSHB invasion in South Africa has been calculated to be a massive R275 billion over the next ten years, if nothing is done to stop the spread of this invasive beetle. Researchers from FABI collaborated with Stellenbosch University ecologists and economists to model the unmitigated economic impact of this invasion.
A recently published paper in the journal Current Forestry Reports documents a collaboration between an international team of forest pathologists and invasion scientists. Led by Dr Trudy Paap, the authors present a framework for conceptualizing and managing invasive forest pathogens.
A recently published review article by Dr Andi Wilson in a special issue of the journal 'Microbiology & Molecular Biology Reviews' provides details of the genes that are essential to the sexual cycle in filamentous Ascomycete fungi and further describes their functions in a variety of model and non-model species.
Penicillium section Canescentia re-evaluated and five new species described from the fynbos biome in South Africa.
In November 2019, the DSI-NRF Centre of Excellence for Invasion Biology hosted a workshop on ‘Frameworks used in Invasion Science’. The workshop led to a NeoBiota special issue on this theme, and includes a review by FABI researchers and international colleagues, exploring frameworks in the context of forest pathology.
A doctoral study in FABI confirms for the first time the presence of Xylosandrus crassiusculus, a polyphagous ambrosia beetle and its fungal symbiont, Ambroseilla roeperi, in three provinces in South Africa. The authors warn that this beetle species could be a threat to native and plantation trees.
A review on invasive gall-forming wasps that threaten non-native Eucalyptus plantations by researchers in the TPCP appears in Agricultural and Forest Entomology. They profile several species of likely Australian origin that have established on non-native Eucalyptus plantations globally and discuss various challenges to their management.
A study in the TPCP confirms the identity of seven novel fungal species associated with Dendroctonus valens, the red turpentine beetle. The study follows on surveys on the fungal associates of the beetle in China and North America. Results from this work appear in Persoonia.
A postdoctoral study in the TPCP describes two novel Huntiella species in the African clade, bringing the number of known species in the genus to 31. Though closely related, the two species display different mating systems. Outcomes from this study appear in the journal MycoKeys.
A review of the invasion history and global management strategies of Eucalyptus snout beetles in the Gonipterus scutellatus species complex by researchers in the TPCP appears in the Journal of Pest Science.
In a collaborative venture with Dr Jos Houbraken (Westerdijk Fungal Biodiversity Institute, the Netherlands), Prof. Cobus M Visagie, Dr Neriman Yilmaz (both from FABI) and others have recently completed and published a major study updating the taxonomy of the Eurotiales.
A study in the Forest Molecular Genetics (FMG) Programme at FABI interrogates the benefits of implementing genomic selection for growth and wood quality traits in an established Eucalyptus grandis breeding programme in South Africa. Outcomes from this study appear in an article.
The first study on alternative weed and cultivated hosts of Spongospora subterraneaf. sp. subterranea (Sss), in southern Africa identifies two species as ideal trap crops for rotation with potatoes. The study also introduces three new families to the known hosts of Sss in the region.
A consortium of microbiologists from around the globe, FABI included, is pushing for an overhaul in how scientific names are assigned to uncultivated bacteria and archaea. Despite their ecological, agricultural and medical importance, these organisms traditionally have not been recognized by the international body governing the nomenclature of prokaryotes.
Professor Cobus Visagie is a researcher in the Applied Mycology group at FABI. One of the group’s research goals is to discover fungal diversity in South Africa, and Cobus’ research is strongly focussed on the economically important genera Aspergillus, Penicillium and Talaromyces.
Postdoctoral research by Dr Norman Muzhinji in the Potato Pathology Programme at the Forestry and Agricultural Biotechnology Institute (FABI) sheds light on the genetic structure and diversity of Spongospora subterranea f. sp. subterranea in four potato-growing regions in South Africa, providing valuable insights on its management.
An MSc study by Kira Lynn in the RGE-FABI Tree Health Programme at the University of Pretoria has described a new Fusarium species, Fusarium rekanum sp. nov., associated with Euwallacea perbrevis, an ambrosia beetle species infesting Acacia crassicarpa plantations in Riau, Indonesia.
FABI postdoctoral Fellow Dr Andi Wilson has established a CRISPR-Cas9-based genome editing protocol for use in Huntiella omanensis, a tree-inhabiting fungus belonging to the Ceratocystidaceae family.
Research undertaken as part of a PhD study by Molly Malefo at the University of Pretoria’s Department of Plant and Soil Sciences and Forestry and Agricultural Biotechnology Institute sheds more light on the role of protease inhibitors in plants under drought stress.
The South African National Biodiversity Institute (SANBI) has funded a postdoctoral research project dedicated to monitoring plant health in botanical gardens and arboreta across South Africa. Two postdoctoral Fellows at the University of Pretoria’s Forestry and Agricultural Biotechnology Institute have held these fellowships.
The first comprehensive study mapping the distribution and genetic diversity of invasive Eucalyptus insect pests in sub-Saharan Africa confirms the presence of five major foliage-feeding species in 14 countries. The results of this study have implications on the quarantine, future research and management of these pests on the continent and beyond.
Dr Joey Hulbert broke new ground when he became the first candidate at the Forestry and Agricultural Biotechnology Institute to complete a PhD study incorporating citizen science. Citizen science is an approach that involves members of the public as active participants in scientific research.
FABI technology unravels the genetics behind fungal genome evolution The RIPper is a bioinformatics tool for the for quantifying genome-wide RIP mutations in fungal genomes. The strength of this software lies in the automation of laborious techniques to study the mutation process called Repeat-Induced Point mutations (RIP). The RIPper applies these technique
With the increased availability in genome data, inferences regarding evolutionary relationships among taxa can now be performed on a genome-wide scale. But it is widely accepted that not all parts of such massive datasets support the same evolutionary hypothesis. Because of this, a group of researchers at FABI recently investigated the effect of this.
The use of genome data to characterize species and elucidate relationships, particularly between problematic taxa, has become routine practice in bacteria. Recently, researchers from FABI joined in an international effort to describe two novel genera and characterize these within the larger context of the important bacterial group Burkholderia.
A PhD student in FABI, Runlei Chang, has discovered and described 19 new fungal species from China as part of the research for his thesis. These fungi are all associated with conifer-infesting bark beetles and their mites and belong to well-known genera such as Ophiostoma and Leptographium.
Two research papers from FABI were selected as cover stories in two consecutive issues of the international journal, Plant Pathology. The journal is published by Wiley for the British Society of Plant Pathology.
Plastids play an integral role in wood formation, and yet they are routinely ignored in the study of xylogenesis in forest trees. Desre Pinard and Dr Eshchar Mizrachi have published a review highlighting the unique biology of plastids in wood, suggesting that a new type of plastid, the xylopast, exists.
Approaches for characterizing metabolic potential from genomic sequences have previously been predicted to be useful in the description of bacterial taxa. Dr Marike Palmer, has recently employed these approaches for identifying biological processes contributing to the divergence of bacteria with a variety of lifestyles.
Comparative genomics is shaping our notion of what fungal species are. Based on current data, these unique evolutionary units are separated from one another by boundaries that are porous under certain conditions. This affects our expectations regarding their population biology and evolution, and our strategies for recognizing and controlling them.
The Polyphagous Shot Hole Borer is an ambrosia beetle native to Southeast Asia. In 2017 this pest was detected in South Africa. Its presence has since been confirmed in all provinces except Limpopo. The beetle has a symbiotic relationship with the fungus Fusarium euwallaceae, which causes branch die-back and death of susceptible trees.
Videos
The impact of a tiny beetle and its deadly fungus on South Africa’s forests (Youtube 36 min) by Prof. Wilhelm de Beer, presented at the National Science and Technology Forum (NSTF) for Plant Health in South Africa on 10 June 2021.
Ecological and economic impact of the polyphagous shot hole borer (YouTube, 5 min; 2022) by Stellenbosch University. Click here to view.
International Year of Plant Health: The Polyphagous Shothole Borer’s effect on South Africa's trees (YouTube video 2.18min; 2020) by the University of Pretoria. Click here to view.
FABI Research Features
The potential economic impact of the polyphagous shot hole borer invasion in South Africa
Non-FABI Publications
Bierman A., F. Roets, J.S. Terblanche (2022) Population structure of the invasive ambrosia beetle, Euwallacea fornicatus, indicates multiple introductions into South Africa. Biological Invasions. 10.1007/s10530-022-02801-x.
de Jager M., F. Roets (2022) Pathogenicity of Fusarium euwallaceae towards apple (Malus domestica) and grapevine (Vitis vinifera). Australasian Plant Disease Notes 17. 10.1007/s13314-022-00456-0.
de Jager M., F. Roets (2022) Rapid and cost-effective detection of Fusarium euwallaceae from woody tissues. Plant Pathology. 10.1111/ppa.13600.
FABI News
Collection of Ambrosia beetle infested material in Durban
14th Online meeting of the Bark Beetle Mycobiome Network
University of Pretoria protects trees against PSHB infestation
Scouting for native natural enemies of PSHB
SANBI Sentinel Plant Project hosts a training workshop for DUT horticulture students
The PSHB takes FABI researchers to Somerset West
Polyphagous Shot Hole Borer online resource
Inspection of invasive disease and pest problems in SANBI's Cape gardens
Prof. Wilhelm de Beer receives the SAIF Distinguished Forestry Award
A webinar on Plant Health in Botanical Gardens amid the COVID-19 pandemic
Getting a PSHB research project done before the lockdown
PSHB is spreading in the Western Cape
Monitoring plant health in botanic gardens and arboreta across South Africa
PSHB survey in Northern Cape Pecan orchards
Shothole Borer meetings in the Cape Peninsula
PSHB fungus tested for pathogenicity on commercial forest trees
Shot Hole borer projects launched in forests of the Southern Cape
Shot Hole Borer invasion places FABI in the spotlight
FABI research work features on Carte Blanche
Tree health experts inspect PSHB infestation in Johannesburg suburbs
FABI Team surveys Johannesburg gardens for PSHB infestations
The impact of the Polyphagous Shothole Borer in South Africa explained in a public seminar at FABI
The PSHB is a 2mm long ambrosia beetle native to Southeast Asia that has a symbiotic relationship with three species of fungi. These include the tree pathogen, Fusarium euwallaceae. This fungus provides a food source for the beetle and its larvae, but in susceptible trees, it kills the vascular tissue, causing branch dieback and tree death.
In its native environment in Southeast Asia, it seems as if the beetle and fungus do not cause serious damage because tree species have evolved with the beetle-fungus complex and have resistance towards them, and because there are most likely a suite of natural enemies of the beetle. However, the beetle and fungus were somehow introduced into Israel and California in the early 2000s where they caused serious damage on several ornamental trees as well as avocado trees. In South Africa the impact of the beetle to date is most visible on ornamental trees.
Identification and species name of the beetle
Until December 2018 the PSHB was known as Euwallacea nr. fornicatus. However, Gomez et al. (2018) showed with DNA sequences that 'Euwallacea fornicatus' is actually a species complex including four closely related, but distinct species. These four species of Shot Hole Borer are very similar in shape, and can only be distinguished by specialists under a microscope or with DNA sequences. The four species carry different fungal species, have different host ranges, and different geographical distributions (Gomez et al. 2018). Although they suggested the name Euwallacea whitfordiodendrus should be used for the PSHB, this was an error that was corrected in a subsequent paper by Smith et al. (2019). The correct names of four Shot Hole Borer species in the E. fornicatus complex are:
1. Tea Shot Hole Borer A [TSHB-a = Euwallacea perbrevis (Schedl 1951)]
Distribution: Asia (American Samoa, China, Indonesia, Papua New Guinea, Samoa, Sri Lanka, Taiwan, Thailand), Australia, and introduced in the USA (Florida and Hawaii)
2. Tea Shot Hole Borer B [TSHB-b = Euwallacea fornicatior (Eggers 1923)]
Distribution: Asia (Malaysia, Papua New Guinea, Singapore, Sri Lanka)
3. Polyphagous Shot Hole Borer [PSHB = Euwallacea fornicatus (Eichhoff 1868), previously referred to as Euwallacea nr. fornicatus and Euwallacea whitfordiodendrus (Schedl 1942)]
Distribution: Asia (China, Hong Kong, Japan, Taiwan, Thailand, and Vietnam) and introduced in USA (California), Israel, South Africa, and Western Australia
4. Kuroshio Shot Hole Borer [KSHB = Euwallacea kuroshio Gomez and Hulcr 2018]
Distribution: Asia (Indonesia, Japan, and Taiwan) and introduced in Mexico and USA (California)
To date, only the PSHB has been found in South Africa. However, both the PSHB and KSHB have invaded California, while TSHB-a has invaded Florida. These species carry similar fungi, have similar life styles and similar effects on trees. With our borders being open for trade to Southeast Asia, the risk that one of the other species can be introduced is very high. Co-occurring species increase the chances for interbreeding which will enhance the adaptability of the beetles to new hosts and new environments, posing a greater threat. From a management perspective, they are dealt with in the same ways. In California they have thus started referring to the PSHB and KSHB jointly with the single term Invasive Shot Hole Borers (ISHB). It is recommended that for management and legislative purposes we also adopt the term ISHB in South Africa.
The Polyphagous Shot Hole Borer is an ambrosia beetle native to Southeast Asia. The beetle has a symbiotic relationship with the fungus Fusarium euwallaceae, which causes branch die-back and can kill susceptible trees. In 2017 the presence of this pest was confirmed in South Africa by the FABI team, and it has since been found in all provinces except Limpopo. This makes the PSHB invasion in South Africa the largest geographical outbreak of this beetle in the world. It is affecting trees in all sectors: the agricultural and commercial forestry sector, urban trees (public spaces, streets, gardens), as well as native trees in natural forests.
At present researchers at FABI, in collaboration with colleagues from several other Universities, are coordinating monitoring efforts and leading research on the PSHB and its fungus in South Africa. The purpose of this webpage is to provide:
1. Background information on the PSHB and its management to the general public and all stake holders,
2. Updated information on its distribution and its host trees in South Africa,
3. Feedback on ongoing research and monitoring efforts by the PSHB Research Network, and
4. A platform for the public to make us aware of possible new host trees of PSHB and localities where it occurs.
New Publications
Yan Z, Zhao Y, Meng X, Gao M, Si H, Zhao G, Bose T, Chang R. (2026) New manganese-oxidizing Acremonium-like fungi from halophytic rhizospheres in the Yellow River Delta, China. Mycologia :1-13.
10.1080/00275514.2026.2627133
Eshetu FB, Barnes I, Nahrung HF, Fitza KNE, Slippers B. (2026) A Century of invasion: How biosecurity influenced populations of Sirex noctilio and Its fungal symbiont in Australasia. Molecular Ecology 35(6):0962 - 1083.
10.1111/mec.70311
Ribeiro MF, Cavallini G, Solce GN, Favoreto AL, De Souza Passos J-R, Barbosa LR, Hurley BP, Wilcken CF. (2026) Cold storage of Gonipterus platensis (Coleoptera: Curculionidae) eggs for Anaphes nitens (Hymenoptera: Mymaridae) rearing. PeerJ :1-14.
10.7717/peerj.20903 
Pham NQ, Marincowitz S, Marpaung YMAN, Tarigan M, Wingfield BD, Wingfield MJ. (2026) Two Cryphonectriaceae species from Eucalyptus leaves in North Sumatra and their stem inoculation outcomes. Fungal Systematics and Evolution 17:69–79.
10.15761/fuse.2026.17.05
Nickles GR, Stokes CK, Narh DL, Lynn KMT, Fuqua SR, Bryan C, Allen BM, Bivins CP, Bok JW, Brewer JS, Buthelezi ST, Clark JPRM, Coon KL, Corby LR, Coetzee MPA, Dewing C, Duong TA, Harris MA, Keller NP, Kopotsa K, Lane FA, Nichols HL, Nieuwoudt A, Nuñez MA, Medina Munoz ME, Park SC, Pham NQ, Ryan KT, Solís M, Vilgalys R, Wallace JM, Wang YW, Wingfield BD, Wingfield MJ, Worley TK, Zallek TA, Zamanian M, Hoeksma JD, Drott M, Pringle A. (2026) Equipped for success: Genomes and metabolites of the European Amanita muscaria are conserved in its novel South African range. New Phytologist
10.1111/nph.71064
Pham NQ, Wingfield MJ, Duong TA, Wingfield BD. (2026) Draft genome sequence of Elsinoe masingae: the causal agent of Eucalyptus scab in South Africa. Australasian Plant Pathology 55:37.
10.1007/s13313-026-01082-5
Pham NQ, Marincowitz S, Wingfield BD, Crous PW, Santos SA, Durán A, Tarigan M, Wingfield MJ . (2026) Pseudoteratosphaeria supramediana sp. nov. (Teratosphaeriaceae, Mycosphaerellales), a new foliar pathogen on Eucalyptus in Indonesia. Australasian Plant Pathology 55:28.
10.1007/s13313-026-01092-3
Nel WJ, Jali S, Barnes I, Wondafrash M, Hurley BP. (2026) Outbreaks of a native jewel beetle, Agrilus grandis (Coleoptera: Buprestidae), on commercial black wattle, Acacia mearnsii, plantations in South Africa. African Entomology 34(1):1-5.
10.17159/2254-8854/2026/a24625
Postma A, Klynsmith L, Duong TA, Allison JD, Smidt W, Waterhouse RM, Lesny P, Oeyen JP, Petersen M, Martin S, Liu S, Zhou X, Ziesmann T, Donath A, Mayer C, Misof B, Niehuis O, Peters RS, Podsiadlowski L, Coetzee MPA, Joubert F, Slippers B. (2026) Genome and transcriptome-based identification and expression profiling of chemosensory gene families across developmental stages and tissues in Sirex noctilio (Hymenoptera: Siricidae). Insect Molecular Biology :1-14.
10.1111/imb.70029
Aylward J, Visagie CM, Roets F, Wingfield BD, Wingfield MJ. (2026) Genome analyses reveal two novel species of Seiridium from Acacia mearnsii. Mycological Progress 25:8.
10.1007/s11557-026-02121-7