The Avocado Research Programme (ARP; previously the Fruit Tree Biotechnology Programme) was established in 2008 as a collaborative initiative between the Hans Merensky Foundation (HMF), Westfalia Technological Services and researchers from the Forestry and Agricultural Biotechnology Institute (FABI). In 2020, under the leadership of by Professor Noëlani van den Berg, the Hans Merensky Chair in Avocado Research was established within the ARP, marking a substantial increase in support for the programme from both HMF and the University of Pretoria.

Research within the ARP is characterised by both industry specific and scholastic queries. The most prominent of which has been improving our understanding, on a molecular level, of the interaction between avocado and the root rot pathogen Phytophthora cinnamomi. Additionally, the ARP’s involvement in the development of industry leading research tools and techniques are accelerating research focused on this pathosystem, along with that of emerging pests and diseases. As such, research at the ARP has grown to include the distribution and impact of Rosellinia necatrix, Avocado sunblotch viroid as well as potentially threatening Ambrosia beetles and their fungal symbionts in South African orchards.

Moreover, a disease clinic has been established within the programme, to service the increasing need for pest and pathogen identification in South African avocado orchards. Given the economic importance of the South African avocado industry and the increased threat from pests and pathogen, the ARP’s mission is to stay ahead of potential threats and continually improve avocado orchard health and productivity. Most importantly, the ARP is passionate about training young researchers to be successful and productive members of society, in keeping with the vision of Dr Hans Merensky.

 

New Publications

Magagula P, Swart V, Fourie A, Vermeulen A, Nelson JH, van Rooyen Z, van den Berg N. (2025) Avocado rhizosphere community profiling: white root rot and its impact on microbial composition. Frontiers in Microbiology 16 10.3389/fmicb.2025.1583797
van den Berg N, Magagula P, Backer R, Swart V. (2025) Towards developing an integrated approach for the treatment of white root rot in commercial avocado orchards. Phytoparasitica 53(32) 10.1007/s12600-025-01250-1 PDF
Harvey A, van den Berg N, Swart V. (2025) In silico characterisation of the avocado WAK/WAKL gene family with a focus on genes involved in defence against Phytophthora cinnamomi. Frontiers in Plant Science 15:1474781. 10.3389/fpls.2024.1474781 PDF
Harvey A, van den Berg N, Swart V. (2024) Describing and characterizing the WAK/WAKL gene family across plant species: a systematic review. Frontiers in Plant Science 15:1467148. 10.3389/fpls.2024.1467148 PDF
Joubert M, van den Berg N, Theron J, Swart V. (2024) Global transcriptomic analysis in avocado nursery trees reveals differential gene expression during asymptomatic infection by avocado sunblotch viroid (ASBVd). Virus Research 339:199263. 10.1016/j.virusres.2023.199263. PDF
Anbu SP, Swart V, van den Berg N. (2023) Unmasking the invaders: NLR-mal function in plant defense. Frontiers in Plant Science 14:1307294. 10.3389/fpls.2023.1307294 PDF
Backer R, Naidoo S, van den Berg N. (2023) The expression of the NPR1-dependent defense response pathway genes in Persea americana (Mill.) following infection with Phytophthora cinnamomi. BMC Plant Biology 23(1):548. 10.1186/s12870-023-04541-z PDF
Wingfield BD, Berger DK, Coetzee MPA, Duong TA, Martin A, Pham NQ, Van den Berg N, Wilken PM, Arun-Chinnappa KS, Barnes I, Buthelezi S, Dahanayaka BA, Durán A, Engelbrecht J, Feurtey A, Fourie A, Fourie G, Hartley J, Kabwe ENK, Maphosa M, Narh Mensah DL, Nsibo DL, Potgieter L, Poudel B, Stukenbrock EH, Thomas C, Vaghefi N, Welgemoed T, Wingfield MJ. (2022) IMA genome‑F17 Draft genome sequences of an Armillaria species from Zimbabwe, Ceratocystis colombiana, Elsinoë necatrix, Rosellinia necatrix, two genomes of Sclerotinia minor, short‑read genome assemblies and annotations of four Pyrenophora teres isolates from barley grass, and a long-read genome assembly of Cercospora zeina. 13:19. 10.1186/s43008-022-00104-3
Wienk R, Mostert‑O’Neill M, Abeysekara N, Manosalva P, Freeman B, van den Berg N. (2022) Genetic diversity, population structure and clonal verification in South African avocado cultivars using single nucleotide polymorphism (SNP) markers. Tree Genetics and Genomes 18(41) 10.1007/s11295-022-01573-8 PDF
Joubert M, van den Berg N, Theron J, Swart V. (2022) Transcriptomics Advancement in the Complex Response of Plants to Viroid Infection. International Journal of Molecular Sciences 23(7677) 10.3390/ijms23147677 PDF