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Senior Lecturer

Department

Genetics
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Co Supervisor
Run Lei Chang

I am a research fellow at FABI, University of Pretoria. My research interests include fungal taxonomy, population genetics and the genetic basis of fungal mating systems with special emphasis on the evolution of homothallism and heterothallism in ascomytetes.

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Publication
Nel WJ, Duong TA, Wingfield BD, Wingfield MJ, De Beer ZW. (2017) A new genus and species for the globally important, multi-host root pathogen Thielaviopsis basicola. Plant Pathology 10.1111/ppa.12803
De Beer ZW, Marincowitz S, Duong TA, Wingfield MJ. (2017) Bretziella, a new genus to accommodate the oak wilt fungus, Ceratocystis fagacearum (Microascales, Ascomycota). MycoKeys 27 10.3897/mycokeys.27.20657 PDF
Pham HTL, Nguyen LTT, Duong TA, Bui DTT, Doan QT, Nguyen HTT, Mundt S. (2017) Diversity and bioactivities of nostocacean cyanobacteria isolated from paddy soil in Vietnam. Systematic and Applied Microbiology 10.1016/j.syapm.2017.08.001
Marincowitz S, Duong TA, Heiniger U, Wingfield BD, Wingfield MJ, De Beer ZW. (2017) A new Leptographium species from the roots of declining Pinus sylvestris in Switzerland. Forest Pathology 10.1111/efp.12346
Taerum SJ, Hoareau TB, Duong TA, De Beer ZW, Jankowiak R, Wingfield MJ. (2017) Putative origins of the fungus Leptographium procerum. Fungal Biology 121(1):82-94. 10.1016/j.funbio.2016.09.007
Wingfield BD, Joubert F, Crampton BG, Swart V, Soal N, Tatham C, Van der Nest MA, Van der Merwe N, Van Wyk S, Wilken PM, Van der Peer Y, Lin Y-C, Olivier N, Berger DK, Steenkamp ET, Lim H-J, Duong TA, Bluhm BH, De Beer ZW, De Vos L, Fourie G, Naidoo K, Wingfield MJ. (2017) Draft genome of Cercospora zeina, Fusarium pininemorale, Hawksworthiomyces lignivorus, Huntiella decipiens and Ophiostoma ips. IMA Fungus 8(2):385-396. 10.5598/imafungus.2017.08.02.10
Wingfield BD, Duong TA, Hammerbacher A, van der Nest MA, Wilson A, Chang R, de Beer ZW, Steenkamp ET, Wilken PM, Naidoo K, Wingfield MJ. (2016) IMA Genome-F 7 Draft genome sequences for Ceratocystis fagacearum, C. harringtonii, Grosmannia penicillata, and Huntiella bhutanensis. IMA Fungus 7(2):317-323. 10.5598/imafungus.2016.07.02.11 PDF
De Beer ZW, Marincowitz S, Duong TA, Kim JJ, Rodrigues A, Wingfield MJ. (2016) Hawksworthiomyces gen. nov. (Ophiostomatales), illustrates the urgency for a decision on how to name novel taxa known only from environmental nucleic acid sequences (ENAS). Fungal Biology 120(11):1323-1340. 10.1016/j.funbio.2016.07.004
De Beer ZW, Duong TA, Wingfield MJ. (2016) The divorce of Sporothrix and Ophiostoma: solution to a problematic relationship. Studies in Mycology 83:165–191. 10.1016/j.simyco.2016.07.001 PDF
Wingfield BD, Ambler JM, Coetzee MPA, De Beer ZW, Duong TA, Joubert F, Hammerbacher A, McTaggart AR, Naidoo K, Nguyen HDT, Ponomareva E, Santana QS, Seifert KA, Steenkamp ET, Trollip C, Van der Nest MA, Visagie CM, Wilken PM, Wingfield MJ, Yilmaz N. (2016) IMA Genome-F 6: Draft genome sequences of Armillaria fuscipes, Ceratocystiopsis minuta, Ceratocystis adiposa, Endoconidiophora laricicola, E. polonica and Penicillium freii DAOMC 242723. IMA Fungus 7(1):217-227. 10.5598/imafungus.2016.07.01.11 PDF
Musvuugwa T, de Beer ZW, Duong TA, Dreyer LL, Oberlander K, Roets F. (2016) Wounds on Rapanea melanophloeos provide habitat for a large diversity of Ophiostomatales including four new species. Antonie van Leeuwenhoek 109(6):877-894. 10.1007/s10482-016-0687-4
Duong TA, De Beer ZW, Wingfield BD, Wingfield MJ. (2016) Mating type markers reveal high levels of heterothallism in Leptographium sensu lato. Fungal Biology 120(4):538-546. 10.1016/j.funbio.2016.01.001
Hernández-Restrepo M, Schumacher RK, Wingfield MJ, Ahmad I, Cai L, Duong TA, Edwards J, Gené J, Groenewald JZ, Jabeen S, Khalid AN, Lombard L, Madrid H, Marin-Felix Y, Marincowitz S, Miller AN, Rajeshkumar K-C, Rashid A, Sarwar S, Stchigel AM, Taylor PWJ, Zhou N, Crous PW. (2016) Fungal Systematics and Evolution: FUSE 2. Sydowia 68:193-230. PDF
Crous PW, Wingfield MJ, Le Roux JJ, Richardson DM, Strasberg D, Shivas RG, Alvarado P, Edwards J, Moreno G, Sharma R, Sonawane M.S., Tan YP, Altés A, Barasubiye T, Barnes CW, Blanchette RA, Boertmann D, Bogo A, Carlavilla JR, Cheewangkoon R, Daniel R, de Beer ZW, de Jesús Yáñez-Morales M, Duong TA, Fernández-Vicente J, Geering ADW, Guest DI, Held BW, Heykoop M, Hubka V, Ismail AM, Kajale SC, Khemmuk W, Kolařík M, Kurli R, Lebeuf R, Lévesque CA, Lombard L, Magista D, Manjón JL, Marincowitz S, et al. (2015) Fungal Planet description sheets: 371–399. Persoonia 35:264-327. 10.3767/003158515X690269 PDF
Wingfield BD, Barnes I, De Beer ZW, De Vos L, Duong TA, Kanzi AM, Naidoo K, Nguyen HDT, Santana QC, Sayari M, Seifert KA, Steenkamp ET, Trollip C, Van der Merwe N, Van der Nest MA, Wilken PM, Wingfield MJ. (2015) Draft genome sequences of Ceratocystis eucalypticola, Chrysoporthe cubensis, C. deuterocubensis, Davidsoniella virescens, Fusarium temperatum, Graphilbum fragrans, Penicillium nordicum, and Thielaviopsis musarum. IMA Fungus 6(2):493-506. 10.5598/imafungus.2015.06.02.13 PDF
Stielow JB, Lévesque CA, Seifert KA, Meyer W, Irinyi L, Smits D, Renfurm R, Verkley GJM, Groenewald M, Chaduli D, Lomascolo A, Welti S, Lesage-Meessen L, Favel A, Al-Hatmi AMS, Damm U, Yilmaz N, Houbraken J, Lombard L, Quaedvlieg W, Binder M, Vaas LAI, Vu D, Yurkov A, Begerow D, Roehl O, Guerreiro M, Fonseca A, Samerpitak K, Van Diepeningen AD, Dolatabadi S, Moreno LF, Casaregola S, Mallet S, Jacques N, Roscini L, Egidi E, Bizet C, Garcia-Hermoso D, Martín MP, Deng S, Groenewald JZ, Boekhout T, De Beer ZW, Barnes I, Duong TA, Wingfield MJ, De Hoog GS, Crous PW, Lewis CT, Hambleton S, Moussa TAA, Al-Zahrani HS, Almaghrabi OA, Louis-Seize G, Assabgui R, McCormick W, Omer G, Dukik K, Cardinali G, Eberhardt U, De Vries M, Robert V. (2015) One fungus, which genes? Development and assessment of universal primers for potential secondary fungal DNA barcodes. Persoonia 35:242-263. 10.3767/003158515X689135
Musvuugwa T, De Beer ZW, Duong T, Dreyer L, Oberlander K, Roets F. (2015) New species of Ophiostomatales from Scolytinae and Platypodinae beetles in the Cape Floristic Region, including the discovery of the sexual state of Raffaelea. Antonie van Leeuwenhoek 108(4):933-950. 10.1007/s10482-015-0547-7
Wingfield BD, Ades PK, Al-Naemi FA, Beirn LA, Bihon W, Crouch JA, De Beer ZW, De Vos L, Duong TA, Fields CJ, Fourie G, Kanzi AM, Malapi-Wight M, Pethybridge SJ, Radwan O, Rendon G, Slippers B, Santana QC, Steenkamp ET, Taylor PWJ, Vaghefi N, Van der Merwe NA, Veltri D, Wingfield MJ. (2015) IMA Genome-F 4. Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata. IMA Fungus 6(1):233-248. 10.5598/imafungus.2015.06.01.15 PDF
Marincowitz S, Duong TA, De Beer ZW, Wingfield MJ. (2015) Cornuvesica: A little known mycophilic genus with a unique biology and unexpected new species. Fungal Biology 119:615-630. 10.1016/j.funbio.2015.03.007 PDF
Yin M, Duong TA, Wingfield MJ, Zhou X, De Beer ZW. (2015) Taxonomy and phylogeny of the Leptographium procerum complex, including L. sinense sp. nov. and L. longiconidiophorum sp. nov. Antonie van Leeuwenhoek 107(2):547-563. 10.1007/s10482-014-0351-9
Duong TA, De Beer ZW, Wingfield BD, Eckhardt LG, Wingfield MJ. (2015) Microsatellite and mating type markers reveal unexpected patterns of genetic diversity in the pine root-infecting fungus Grosmannia alacris. Plant Pathology 64(1):235-242. 10.1111/ppa.12231 PDF
De Beer ZW, Duong TA, Barnes I, Wingfield BD, Wingfield MJ. (2014) Redefining Ceratocystis and allied genera. Studies in Mycology 79:187-219. 10.1016/j.simyco.2014.10.001 PDF
Crous PW, Shivas RG, Quaedvlieg W, Van der Bank M, Zhang Y, Summerell BA, Guarro J, Wingfield MJ, Wood AR, Alfenas AC, Braun U, Cano-Lira JF, García D, Marin-Felix Y, Alvarado P, Andrade JP, Armengol J, Assefa A, Breeÿen AD, Camele I, Cheewangkoon R, Souza JTD, Duong TA, Esteve-Raventós F, Fournier J, Frisullo S, García-Jiménez J, Gardiennet A, Gené J, Hernández-Restrepo M, Hirooka Y, Hospenthal DR, King A, Lechat C, Lombard L, Mang SM, Marbach PAS, Marincowitz S, Marin-Felix Y, Montaño-Mata NJ, Moreno G, Perez CA, Sierra AMP, Robertson JL, Roux J, et al. (2014) Fungal Planet description sheets: 214–280. Persoonia 32:184-306. 10.3767/003158514X682395 PDF
Romón P, De Beer ZW, Zhou XD, Duong TA, Wingfield BD, Wingfield MJ. (2014) Multigene phylogenies of Ophiostomataceae associated with Monterey pine bark beetles in Spain reveal three new fungal species. Mycologia 106(1):119-132. 10.3852/13-073 PDF
Bihon W, Wingfield MJ, Slippers B, Duong TA, Wingfield BD. (2014) MAT gene idiomorphs suggest a heterothallic sexual cycle in a predominantly asexual and important pine pathogen. Fungal Genetics and Biology 62:55-61. 10.1016/j.fgb.2013.10.013 PDF
Taerum SJ, Duong TA, De Beer ZW, Gillette N, Sun J, Owen DR, Wingfield MJ. (2013) Large shift in symbiont assemblage in the invasive red turpentine beetle. PLoS ONE 8(10):e78126. 10.1126/science.aac6674 PDF
Duong TA, De Beer ZW, Wingfield BD, Wingfield MJ. (2013) Characterization of the mating-type genes in Leptographium procerum and Leptographium profanum. Fungal Biology 117(6):411-421. 10.1016/j.funbio.2013.04.005 PDF
Engelbrecht J, Duong TA, Van den Berg N. (2013) Development of a Nested Quantitative Real-Time PCR for Detecting Phytophthora cinnamomi in Persea americana Rootstocks. Plant Disease 97(8):1012-1017. 10.1094/PDIS-11-12-1007-RE
Linnakoski R, De Beer ZW, Duong TA, Niemelä P, Pappinen A, Wingfield MJ. (2012) Grosmannia and Leptographium spp. associated with conifer-infesting bark beetles in Finland and Russia, including Leptographium taigense sp. nov. Antonie van Leeuwenhoek 102(2):375-399. 10.1007/s10482-012-9747-6 PDF
Duong TA, De Beer ZW, Zanzot JW, Wingfield MJ, Wingfield BD. (2012) Microsatellite markers for Grosmannia alacris (Ophiostomataceae, Ascomycota) and other species in the G. serpens complex. American Journal of Botany 99(5):E216-E219. 10.3732/ajb.1100527 PDF
Duong TA, De Beer ZW, Wingfield BD, Wingfield MJ. (2012) Phylogeny and taxonomy of species in the Grosmannia serpens complex. Mycologia 104(3):715-732. 10.3852/11-109 PDF
Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, Chen W, Bolchacova E, Voigt K, Crous PW, Miller AN, Wingfield MJ, Aime MC, An KD, Bai FY, Barreto RW, Begerow D, Bergeron MJ, Blackwell M, Boekhout T, Bogale M, Boonyuen N, Burgaz AR, Buyck B, Cai L, Cai Q, Cardinali G, Chaverri P, Coppins BJ, Crespo A, Cubas P, Cummings C, Damm U, De Beer ZW, De Hoog GS, Del-Prado R, Dentinger B, Dieguez-Uribeondo J, Divakar PK, Douglas B, Duenas M, Duong TA, et al. (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences of the United States of America 109(16):6241-6246. 10.1073/pnas.1117018109 PDF
Six D, De Beer ZW, Duong TA, Carroll A, Wingfield MJ. (2011) Fungal associates of the lodgepole pine beetle, Dendroctonus murrayanae. Antonie van Leeuwenhoek 100(2):231-244. 10.1007/s10482-011-9582-1 PDF
Thanh V, Mai L, Duong TA. (2008) Microbial diversity of traditional Vietnamese alcohol fermentation starters (banh men) as determined by PCR-mediated DGGE. International Journal of Food Microbiology 128:268-273. 10.1016/j.ijfoodmicro.2008.08.020